EY665107

Overview
NameEY665107
Unique NameEY665107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 71/174 (40.80%), Postives = 93/174 (53.45%), Query Frame = 3
Query:   12 GLSSDPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 512
            GL+SDPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG   +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   92 GLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 76/193 (39.38%), Postives = 105/193 (54.40%), Query Frame = 3
Query:   21 SDPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 524
            SDPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:   84 SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 70/174 (40.23%), Postives = 89/174 (51.15%), Query Frame = 3
Query:   12 GLSSDPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 512
            GL SDPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG   +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   92 GLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   48 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 518
            RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  137 RECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   48 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 518
            RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  134 RECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 67/174 (38.51%), Postives = 89/174 (51.15%), Query Frame = 3
Query:   12 GLSSDPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAH-IFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 521
            GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG    F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:   81 GLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 65/152 (42.76%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   48 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 494
            RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:  138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 65/174 (37.36%), Postives = 88/174 (50.57%), Query Frame = 3
Query:   12 GLSSDPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAH-IFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 521
            GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG    F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:   80 GLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 71/165 (43.03%), Postives = 87/165 (52.73%), Query Frame = 3
Query:   39 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 521
            A+ RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ RLAM S FG+ VQA+ TG+G L +LA   AD +NN
Sbjct:  131 ARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGK--VELDGASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276          
BLAST of EY665107 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 68/165 (41.21%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   12 GLSSDPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG---EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 497
            GL++DP TF + +  EV HCR +ML  +GC+ PELL  NG  F   +W K   + F                    A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKNGRLAM  MFG  VQ+ VTGK P+ NL D
Sbjct:  398 GLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF--QIWDKVDFNRF--------------------AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530          

HSP 2 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 60/173 (34.68%), Postives = 85/173 (49.13%), Query Frame = 3
Query:   15 LSSDPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 524
            L++DP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D       +  E+KNGRLA+ ++ G   Q + TG+ PL NL+ HLA+P+  N
Sbjct:  215 LAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGAN 354          

HSP 3 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 62/174 (35.63%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   12 GLSSDPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 524
            GL++DP+TF + R  EV H R AML  +G + P+ L       G+ +W++A  +                       I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKNGRLA+ ++ GF VQ  V G  PL NLA+HL  P+  N
Sbjct:   29 GLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRN 166          
The following BLAST results are available for this feature:
BLAST of EY665107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB12_SOLLC2.054e-2540.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PEA8.628e-2439.38Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY1.922e-2340.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4A_ARATH2.775e-2244.94Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.055e-2144.30Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH2.872e-1938.51Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4C_ARATH8.357e-1942.76Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB24_PEA3.176e-1837.36Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB29_CHLRE1.576e-1743.03Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
LH18_EUGGR3.511e-1741.21Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665107 ID=EY665107; Name=EY665107; organism=Citrus sinensis; type=EST; length=700bp
CCACGCGTCCGGGGCTTTCATCTGACCCAGAAACCTTTGCCAAGAACCGT
GAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATG
CGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCG
TGTGGTTCAAGGCGGGGGCCCATATCTTCAGCGAGGGCGGGCTTGACTAC
TTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGC
TTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAG
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
TTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCNNTTATTTGAGTT
GTGATTATTTATAAAATGCTTCNNATTGATCTAAAAAAAAAAAAAAAAAA
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