EH406448

Overview
NameEH406448
Unique NameEH406448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 76/149 (51.01%), Postives = 96/149 (64.43%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            +KAV V+ G   V+G + F Q+G GP  V+G ++GL  G HGFHVH  GD TNGC S G HFNP GK+HG P+D +RH              A   + D+ I L+GP+ IIGR +VVHA  DDLG+GG   SK TGNAG R+ACG+IG+
Sbjct:    4 LKAVCVMKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHV-GDLGNVTAKGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGI 151          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 82/150 (54.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:   81 VAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 518
            +AVL G + V G + F QE +G PTT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P DE RH             TA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAG RVACGI+ +
Sbjct:    6 IAVLRG-DNVSGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAV 154          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 79/148 (53.38%), Postives = 94/148 (63.51%), Query Frame = 3
Query:   75 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 82/152 (53.95%), Postives = 96/152 (63.16%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            MVKAVAVL G  GV G V F QE D   TT+S +++G +P   HGFH+H  GD TNGC S+G HFNP  K HG PEDENRH              A  +  D  I + GP SI+GR VVVHA  DDLG+GG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 82/161 (50.93%), Postives = 100/161 (62.11%), Query Frame = 3
Query:   48 VLRSHSTMVKAVAVLGGTEG-VKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 518
            + R+ +    A+AVL    G + GT+ F Q+ +  TT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P DE RH             TA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAGGRVACGI+ +
Sbjct:   38 IRRTITKTATAIAVLHSDNGNINGTIHFQQDKNS-TTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAI 197          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 77/149 (51.68%), Postives = 95/149 (63.76%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            +KAV VL G   V+GT+ F Q+G GP  VSG+++GL  G HGFHVH   D T GC S GPHFNP  K+HG P+D+ RH              A  ++ D+ I LSG  SIIGR +VVH   DDLGKG +E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 78/150 (52.00%), Postives = 94/150 (62.67%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            +KAV VL G   V+GT+ F Q+  G P  +SG ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P DE RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.850e-38
Identity = 79/152 (51.97%), Postives = 97/152 (63.82%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            MVKAVAVL G+ GV G V+  Q  +  PTT++  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HG P+DENRH              A   + D+ + L GP S++GR+VVVHA  DDLGKGG+E S  TGNAG R ACG+IGL
Sbjct:    1 MVKAVAVLRGSAGVSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 77/150 (51.33%), Postives = 96/150 (64.00%), Query Frame = 3
Query:   72 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            +KAV VL G   V+G ++F Q E +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of EH406448 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 82/152 (53.95%), Postives = 95/152 (62.50%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 518
            MVKAVAV+ G   V+GTV F QE +  PTT+S  + G  P    GFH+H  GD TNGC S GPHFNP GK+HG PED+ RH              A  T  D  I L G +SI+GR +VVHA  DD GKGG E SKTTG+AG R ACG+IGL
Sbjct:    1 MVKAVAVVRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152          
The following BLAST results are available for this feature:
BLAST of EH406448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_CHICK1.276e-3851.01Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_BRUPA1.667e-3854.67Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC_BOVIN1.667e-3853.38Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_ASHGO1.667e-3853.95Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODE_BRUPA2.177e-3850.93Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_CANFA2.177e-3851.68Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_MOUSE2.844e-3852.00Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_CANGA4.850e-3851.97Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_HYLLA6.335e-3851.33Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_CANAL6.335e-3853.95Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AB11FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406448 ID=EH406448; Name=EH406448; organism=Citrus sinensis; type=EST; length=713bp
CCTCTTTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATC
GTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCCAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAA
TAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTT
GAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTAAAACTT
TGTTGTGTATGTTGAATGGTTTTCGTATAATCTCCATCTTTACATTTTCA
TTTAGTTTATCCT
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