EY665086

Overview
NameEY665086
Unique NameEY665086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 2.145e-98
Identity = 153/221 (69.23%), Postives = 179/221 (81.00%), Query Frame = 3
Query:   39 PVV*EIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATDAARPVLGKYYREPKKSGPIPFNLFGDLIRSMGKDHYVSDNGDXVYYQTDPQL 701
            P+   +Y+ L  +TR LR+ +P P+LAYP YL  RSPGK GSHF+P S LF PSERK + TST CW+ M   L+ LSFV GP+ +LK+YGVPY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD GD V+Y+TDP L
Sbjct:  155 PLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375          

HSP 2 Score: 38.5058 bits (88), Expect = 2.145e-98
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 1
Query:    1 QNHGHVENDESWHPLSEK 54
            QNHGHVENDESW PL E+
Sbjct:  142 QNHGHVENDESWVPLPER 159          
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.009e-27
Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  114 LAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIG-THVIHHLFPQIPHYHLIEATDAARPVLGKYYR 578
            L +P YL++   GK      +HFDP S +F   ER  V+ S +    + A+L G+   +   G   +  +YG+P     ++ D++TYLHH      LP Y   EW++LRG L+T+DRD+G+ N++ HD+  THV+HHLF  IPHYH  EA DA   VLG +Y+
Sbjct:  181 LGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDL---GLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHT--HLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYK 338          
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.207e-25
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  114 LAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATDAARPVLGKYYR 578
            L +P YL     G+       H+DP   ++   ER  +  S     A+   L  L+   G   ++ +YGVP  +   +L L+T+L H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +EAT A +P+LG+YYR
Sbjct:  188 LGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT--HPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYR 345          
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.207e-25
Identity = 66/171 (38.60%), Postives = 91/171 (53.22%), Query Frame = 3
Query:   81 RFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATDAARPVLGKYYR 578
            R +   + F +L +P YL     G+       HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHY+ +EAT A +P+LG YY+
Sbjct:  178 RIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345          
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.144e-25
Identity = 64/162 (39.51%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  114 LAYPFYLWSRS------PGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATDAARPVLGKYYR 578
            L +P Y W+ +      P     HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +E T A +P+LG YY+
Sbjct:  188 LGWPLY-WAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQ 346          
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  114 LAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNI-HHDIGTHVIHHLFPQIPHYHLIEATDAARPVLGKYYR 578
            + +P YL     G+      SH+ P + ++   ER  +  S V   ++   L  ++ + G + LL +YGVP  I   +L  +TYL H      LP Y   EW +L+G L T+DRDYG  N + HH   THV HHLF  +PHYH +EAT+A +P+LG+YY+
Sbjct:  192 IGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFA--LPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQ 349          
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.120e-23
Identity = 69/198 (34.85%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  111 LLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATDAARPVLGKYYREPKKSGPIPFNLFGDLIRSMGKDHYVSDNGDXVYYQ 686
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y VPY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GD V+++
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
BLAST of EY665086 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.687e-23
Identity = 68/198 (34.34%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  111 LLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATDAARPVLGKYYREPKKSGPIPFNLFGDLIRSMGKDHYVSDNGDXVYYQ 686
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GD V+++
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
The following BLAST results are available for this feature:
BLAST of EY665086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3E_ARATH2.145e-9869.23Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL2.009e-2740.49Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FD6E2_SOYBN3.207e-2539.38Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH3.207e-2538.60Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU7.144e-2539.51Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN9.331e-2538.75Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORAP5.120e-2334.85Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS6.687e-2334.34Delta(12) fatty acid desaturase OS=Mortierella isa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665086 ID=EY665086; Name=EY665086; organism=Citrus sinensis; type=EST; length=921bp
CAAAACCATGGGCATGTTGAGAATGATGAATCCTGGCACCCGTTGTCTGA
GAAATTTACAGGACTTTGGATAGTGCAACAAGATTTTTGAGATTCAAAAT
TCCTTTTCCCTTGCTTGCATATCCCTTTTATCTTTGGAGTAGGAGTCCGG
GGAAGACTGGTTCTCACTTTGACCCTAACAGTGACCTGTTTGTCCCAAGT
GAGAGGAAGGATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCTGC
TTTGCTAGTGGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAAAC
TCTATGGCGTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGACT
TACTTGCATCACCATGGGCATGAAGACAAACTTCCGTGGTATCGTGGAAA
GGAATGGAGTTACTTAAGGGGAGGGCTCACAACACTTGATCGTGACTATG
GATGGTTCAATAACATCCACCACGATATTGGAACCCACGTCATACATCAC
CTCTTCCCTCAGATCCCGCATTACCACTTAATAGAAGCAACTGATGCTGC
TAGACCAGTTCTTGGAAAATATTACCGTGAGCCAAAGAAATCGGGACCGA
TACCTTTTAACCTTTTTGGAGATTTAATTAGAAGCATGGGTAAAGACCAC
TATGTTAGTGACAATGGCGATGNTGTTTACTACCAGACCGACCCACAGCT
TAACGGCTCTTCCAATCAGGNNTAAGCTGGGCAGCTTTCTTATCTTGACC
CGNCGTATTTAAATACCTTTAGCAATCCCTTAGCAGTCTTATATCTACAA
TGATTTGACGATCCCCATTTTGGTACGGGATTCCTATTACAAGATGATNG
GCATCTAACAAAGAGATTGCTTCTGCTTCTTCAATTAAGGCAGATTATGA
AAAGTTTCCCATTGGAAGTGA
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