EY665080

Overview
NameEY665080
Unique NameEY665080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.605e-84
Identity = 152/201 (75.62%), Postives = 168/201 (83.58%), Query Frame = 3
Query:  153 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPL E  DPLYPGG+FDPLGLADDP +FAELKVK ++ G  AM      FV+ +
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAI 232          

HSP 2 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 2
Query:  617 PIVPRWQL*SIGFG**PXGFC*AQG*GNQNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            P+ P      +G    P  F   +    +NGR+   SMFGFF QAIVTGKGP+ N  DH  DPV NNAWA+A    P
Sbjct:  187 PLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVP 263          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.828e-75
Identity = 151/224 (67.41%), Postives = 166/224 (74.11%), Query Frame = 3
Query:   99 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPLSPARD 770
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPL EVTDPLYP GSFD LGLA+D  AFAELKVK ++ G  AM      FV+ +   +D
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKD 240          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.828e-75
Identity = 138/190 (72.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  189 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP  E  DPLYPG SFDPLGLADDP  FAELKVK I+ G  AM  C   FV+ +
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAI 223          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.381e-74
Identity = 138/201 (68.66%), Postives = 159/201 (79.10%), Query Frame = 3
Query:  165 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP  E  DPLYPG SFDPLGLADDP  FAELKVK I+ G  A       FV+ +
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAI 220          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.905e-69
Identity = 138/222 (62.16%), Postives = 159/222 (71.62%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGS-FDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P     + LYPGG  FDPLGLADDP  FAELKVK I+ G  AM      FV+ +
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAI 232          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.244e-69
Identity = 139/221 (62.90%), Postives = 160/221 (72.40%), Query Frame = 3
Query:  102 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGS-FDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G       + LYPGG  FDPLGLADDP  FAELKVK I+ G  AM      FV+ +
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAI 235          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.783e-66
Identity = 127/188 (67.55%), Postives = 147/188 (78.19%), Query Frame = 3
Query:  204 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP--LREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG     +  D LYPGG FDPLGLADDP  FAELKVK I+ G  AM  CL  FV+ +
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAI 220          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.012e-62
Identity = 127/198 (64.14%), Postives = 146/198 (73.74%), Query Frame = 3
Query:  168 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP  E  DPLYPG +FDPLGLADDP  FAELKVK I+ G  AM  CL  FV+ +
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAI 241          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.520e-45
Identity = 89/117 (76.07%), Postives = 97/117 (82.91%), Query Frame = 3
Query:  405 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPL E  DPLYPG +FDPLGLADDP A AELKVK I+ G  AM      FV+ +
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAI 117          

HSP 2 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 2
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            +NGR+   SMFGFF QAIVTGKGP+ N  DH  DPV NNAWAYA    P
Sbjct:  100 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVP 148          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.055e-35
Identity = 95/199 (47.74%), Postives = 113/199 (56.78%), Query Frame = 3
Query:  177 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVR 749
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DP   A LKVK I+ G  AM   L  F++
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNG--LDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQ 242          
The following BLAST results are available for this feature:
BLAST of EY665080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB215_PEA1.605e-8475.62Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_MALDO8.828e-7567.41Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLMO8.828e-7572.63Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE4.381e-7468.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.905e-6962.16Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU4.244e-6962.90Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE9.783e-6667.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.012e-6264.14Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY9.520e-4576.07Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.055e-3547.74Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665080 ID=EY665080; Name=EY665080; organism=Citrus sinensis; type=EST; length=859bp
CTTCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACA
CTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGT
TCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGG
AACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCA
GGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGC
TNCGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTG
GGTTTGGCTGATGACCCGNAGGCTTTTGCTGAGCTCAAGGTTAAGGGAAT
CAGAATGGGAGGGTGGGCTATGTCTCCATGTTTGGTTTCTTTCGTCAGGC
CATTGTCACCGGCAAGGGACCCGTANAGAACTNGGCCGACCACTGGNCTG
ACCCTGTCAATAACAATGCCTGGGCCTACGCACCAACTTTGTCCCCGGAA
GTGAGCTCN
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