EY665080

Overview
NameEY665080
Unique NameEY665080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.323e-29
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 3 
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPL EV DPLYPGGSFDPLGLA+DP AFAELKVK I+ G  AM      FV+ +
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 234

HSP 2 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:  617 PIVPRWQL*SIGFG**PXGFC*AQG*GNQNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            P+ P      +G    P  F   +    +NGR+   SMFGFF QAIVTGKGP+ N ADH  DPVNNNAWA+A    P
Sbjct:  189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 265
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.323e-29
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 3 
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPL EV DPLYPGGSFDPLGLA+DP AFAELKVK I+ G  AM      FV+ +
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 234

HSP 2 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:  617 PIVPRWQL*SIGFG**PXGFC*AQG*GNQNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            P+ P      +G    P  F   +    +NGR+   SMFGFF QAIVTGKGP+ N ADH  DPVNNNAWA+A    P
Sbjct:  189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 265
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.323e-29
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 3 
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPL EV DPLYPGGSFDPLGLA+DP AFAELKVK I+ G  AM      FV+ +
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 83

HSP 2 Score: 74.3294 bits (181), Expect = 9.666e-13
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:  617 PIVPRWQL*SIGFG**PXGFC*AQG*GNQNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            P+ P      +G    P  F   +    +NGR+   SMFGFF QAIVTGKGP+ N ADH  DPVNNNAW+YA    P
Sbjct:   38 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVP 114
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.323e-29
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 3 
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPL EV DPLYPGGSFDPLGLA+DP AFAELKVK I+ G  AM      FV+ +
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 232

HSP 2 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:  617 PIVPRWQL*SIGFG**PXGFC*AQG*GNQNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            P+ P      +G    P  F   +    +NGR+   SMFGFF QAIVTGKGP+ N ADH  DPVNNNAWA+A    P
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 263
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.323e-29
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 3 
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPL EV DPLYPGGSFDPLGLA+DP AFAELKVK I+ G  AM      FV+ +
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 232

HSP 2 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:  617 PIVPRWQL*SIGFG**PXGFC*AQG*GNQNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            P+ P      +G    P  F   +    +NGR+   SMFGFF QAIVTGKGP+ N ADH  DPVNNNAWA+A    P
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 263
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-26
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 3 
Query:  486 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPL E  D LYPGGSFDPL    DP AFAELKVK I+ G  AM      FV+ +
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 91

HSP 2 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 2 
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNNAWAYAPTLSP 847
            +NGR+   SMFGFF QAIVTGKGP+ N ADH  DPVNNNAWA+A    P
Sbjct:   74 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 122
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.079e-25
Identity = 74/210 (35.24%), Postives = 100/210 (47.62%), Query Frame = 3 
Query:   99 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAM 722
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R      ++     YPGG+FDPLG + DP  F ELK+K I+ G  AM
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAM 199

HSP 2 Score: 33.8834 bits (76), Expect = 1.079e-25
Identity = 16/40 (40.00%), Postives = 24/40 (60.00%), Query Frame = 2 
Query:  701 QNGRVGYVSMFGF-FRQAIVTGKGPVXNXADHWXDPVNNN 817
            +NGR+  ++  GF  +Q+   G GP+ N A H  DP +NN
Sbjct:  193 KNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.959e-24
Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 3 
Query:  246 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAM 722
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R      ++     YPGG+FDPLG + DP  F ELKVK I+ G  A+
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLAL 200

HSP 2 Score: 34.2686 bits (77), Expect = 1.959e-24
Identity = 16/40 (40.00%), Postives = 25/40 (62.50%), Query Frame = 2 
Query:  701 QNGRVGYVSMFGF-FRQAIVTGKGPVXNXADHWXDPVNNN 817
            +NGR+  +++ GF  +Q+   G GP+ N A H  DP +NN
Sbjct:  194 KNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.295e-24
Identity = 66/178 (37.08%), Postives = 90/178 (50.56%), Query Frame = 3 
Query:  213 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLREVTDPLYPGGS-FDPLGL-ADDPXAFAELKVKGIRMGGWAM 722
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ K I+ G  AM
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAM 230

HSP 2 Score: 32.7278 bits (73), Expect = 7.295e-24
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 2 
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDP 805
            +NGR+  +++ G + Q I TG GP+ N   H  DP
Sbjct:  224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
[Close]
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.092e-23
Identity = 69/191 (36.13%), Postives = 93/191 (48.69%), Query Frame = 3 
Query:  174 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLREVTDPLYPGGS-FDPLGL-ADDPXAFAELKVKGIRMGGWAM 722
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ K I+ G  AM
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAM 230

HSP 2 Score: 32.7278 bits (73), Expect = 2.092e-23
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 2 
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDP 805
            +NGR+  +++ G + Q I TG GP+ N   H  DP
Sbjct:  224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
The following BLAST results are available for this feature:
BLAST of EY665080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2F_SOLLC7.323e-2977.11Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC7.323e-2977.11Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC7.323e-2977.11Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC7.323e-2977.11Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC7.323e-2977.11Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA1.169e-2669.23Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU1.079e-2535.24Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.959e-2439.75Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC7.295e-2437.08Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.092e-2336.13Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665080 ID=EY665080; Name=EY665080; organism=Citrus sinensis; type=EST; length=859bp
CTTCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACA
CTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGT
TCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGG
AACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCA
GGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGC
TNCGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTG
GGTTTGGCTGATGACCCGNAGGCTTTTGCTGAGCTCAAGGTTAAGGGAAT
CAGAATGGGAGGGTGGGCTATGTCTCCATGTTTGGTTTCTTTCGTCAGGC
CATTGTCACCGGCAAGGGACCCGTANAGAACTNGGCCGACCACTGGNCTG
ACCCTGTCAATAACAATGCCTGGGCCTACGCACCAACTTTGTCCCCGGAA
GTGAGCTCN
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