EY665080

Overview
NameEY665080
Unique NameEY665080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.874e-19
Identity = 63/157 (40.13%), Postives = 81/157 (51.59%), Query Frame = 3
Query:  252 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---REVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGG 713
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +    AE+K   + M G
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTEYTKEAEIKNGRLAMNG 509          

HSP 2 Score: 30.8018 bits (68), Expect = 5.874e-19
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 2
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXAD 790
            +NGR+    MFG   Q+ VTGK P+ N  D
Sbjct:  501 KNGRLAMNGMFGLEVQSHVTGKSPINNLID 530          

HSP 3 Score: 78.5666 bits (192), Expect = 3.013e-17
Identity = 53/151 (35.10%), Postives = 72/151 (47.68%), Query Frame = 3
Query:  243 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG--PLREVTDPLYPGGSFDPLGLADDPXAFAELK 689
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG    +   D  YPG  FDPL L  D    AE+K
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTDYTRAAEVK 316          

HSP 4 Score: 31.187 bits (69), Expect = 3.013e-17
Identity = 12/39 (30.77%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNN 817
            +NGR+   ++ G   Q + TG+ P+ N + H  +P+  N
Sbjct:  316 KNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGAN 354          

HSP 5 Score: 72.7886 bits (177), Expect = 5.393e-16
Identity = 52/148 (35.14%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLREVTDP--LYPGGSFDPLGLADDPXAFAELK 689
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G ++E +DP  +YPG  FDPL L  D    AE+K
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128          

HSP 6 Score: 32.7278 bits (73), Expect = 5.393e-16
Identity = 14/39 (35.90%), Postives = 21/39 (53.85%), Query Frame = 2
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNNN 817
            +NGR+   ++ GF  Q  V G  P+ N A+H   P+  N
Sbjct:  128 KNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRN 166          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.692e-17
Identity = 51/79 (64.56%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  507 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAMSPCL 734
            +LIHA+S+LAI A QV+LMGAVEGYR    A G   E  D LYPGG FDPLGLADDP  F ELKVK I+ G  AMS  L
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGML 82          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.640e-15
Identity = 69/230 (30.00%), Postives = 94/230 (40.87%), Query Frame = 3
Query:  165 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGS-FDPLGLADDPXAFAELKVKGIRMGGWAM 722
            +K+  K+V++  P + P  +          P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG ++    G  YLG P      ++  IW  +V+++G +E  R A     +    LYPGG  FDPLGLA DP   A+L++  I+    AM
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAE---LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAM 250          

HSP 2 Score: 36.965 bits (84), Expect = 2.640e-15
Identity = 16/37 (43.24%), Postives = 23/37 (62.16%), Query Frame = 2
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVN 811
            ++ R+  V+  GF  QA  TGKGP+ N A H  DP++
Sbjct:  244 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.432e-15
Identity = 70/226 (30.97%), Postives = 91/226 (40.27%), Query Frame = 3
Query:  177 SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPLYPGGS-FDPLGLADDPXAFAELKVKGIRMGGWAM 722
            +K+V S  P + P           + P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG ++    G  YLG P      ++  IW  +V+++G +E  R A     +    LYPGG  FDPLGLA DP   A+L++  I+    AM
Sbjct:   45 AKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAE---LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAM 247          

HSP 2 Score: 36.5798 bits (83), Expect = 3.432e-15
Identity = 16/37 (43.24%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  701 QNGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVN 811
            ++ R+  V   GF  QA  TGKGP+ N A H  DP++
Sbjct:  241 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.448e-15
Identity = 50/168 (29.76%), Postives = 73/168 (43.45%), Query Frame = 3
Query:  255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLREVTDPL------------YPGGSFDPLGLADDPXAFAELKVKGIRMGGWAM 722
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG + +      +  + +L   + IL+ +         +  ++    P     DP+            YPGG F+PL  A       E K K I  G  AM
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEY------FASSSTLFVIEFILSHYV-------EIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRLAM 212          

HSP 2 Score: 36.965 bits (84), Expect = 3.448e-15
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  704 NGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNN 814
            NGR+  ++  GF  Q  VTGKGP  N   H  DP +N
Sbjct:  207 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 9.832e-15
Identity = 53/160 (33.12%), Postives = 73/160 (45.62%), Query Frame = 3
Query:  255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLREVTDPLYPGGSFDPLGLADDPXAFAELKVKGIRMGGWAM 722
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A       E K K +  G  AM
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPT----QEAKEKELANGRLAM 213          

HSP 2 Score: 36.965 bits (84), Expect = 9.832e-15
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  704 NGRVGYVSMFGFFRQAIVTGKGPVXNXADHWXDPVNN 814
            NGR+  ++  GF  Q  VTGKGP  N   H  DP +N
Sbjct:  208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 75/231 (32.47%), Postives = 103/231 (44.59%), Query Frame = 3
Query:  147 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LREVTDPLYPGGS-FDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     L    DP YPGG  F+PLG   D  +  ELK+K I+ G  AM   L  F++ L
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQAL 244          
BLAST of EY665080 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 65/190 (34.21%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  258 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI----------WA-----CQVVLMGAVEGYRIAGGPLREVTDPLYPGGS-FDPLGLADDPXAFAELKVKGIRMGGWAMSPCLVSFVRPL 755
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +   +    +  +          WA      +   +G  +G+  +G       +P YPGG  F+PLG   D  +  ELK+K ++ G  AM   L  F++ L
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSG-------NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL 246          
The following BLAST results are available for this feature:
BLAST of EY665080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
LH18_EUGGR5.874e-1940.13Light-harvesting complex I LH38 proteins (Fragment... [more]
CB21_EUGGR1.692e-1764.56Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB4A_ARATH2.640e-1530.00Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.432e-1530.97Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_PEA3.448e-1529.76Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH9.832e-1533.13Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB13_SOLLC4.313e-1332.47Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.255e-1234.21Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665080 ID=EY665080; Name=EY665080; organism=Citrus sinensis; type=EST; length=859bp
CTTCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACA
CTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGT
TCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGG
AACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCA
GGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGC
TNCGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTG
GGTTTGGCTGATGACCCGNAGGCTTTTGCTGAGCTCAAGGTTAAGGGAAT
CAGAATGGGAGGGTGGGCTATGTCTCCATGTTTGGTTTCTTTCGTCAGGC
CATTGTCACCGGCAAGGGACCCGTANAGAACTNGGCCGACCACTGGNCTG
ACCCTGTCAATAACAATGCCTGGGCCTACGCACCAACTTTGTCCCCGGAA
GTGAGCTCN
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