FC871834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13 Identity = 49/177 (27.68%), Postives = 87/177 (49.15%), Query Frame = 2 Query: 221 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQ-AEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV + Q + Q AE++ + ++YV ++ ++ + +K F G++ S ++R P T K GFGF+ + +N L GQ +RV KA Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG-RPGSIGQAQPIIEQLAEEARAYN---RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.841e-13 Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = 2 Query: 218 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 R +Y+GN+ R++ + ++ + G + ++I + + + FV DA A + +NG +I G+E+KVN P +Q + + SN + V+VG+L+ +T+E +K F+ G++ A+V + T KS G+GFV+F + L G++IR N A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173 HSP 2 Score: 70.4774 bits (171), Expect = 1.319e-11 Identity = 47/188 (25.00%), Postives = 83/188 (44.15%), Query Frame = 2 Query: 197 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYK-------VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 736 DT + F V++G++ I +++ G + A V+ D TG+S+ + FV+ DA I + G +GGR+I+ N T KP A + F D + VY G +A +T +++++ FS GQ++ +V G+ FV F +N + +EG ++ Sbjct: 92 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 221 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 457 ++++GN+ N+D+ +L ++ + G VE EVIYDK TGRSR F FVTM T + A ++ NG E GR ++VN P Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13 Identity = 51/151 (33.77%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYKV---YVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV+ + EDA ++++NG E+ G++I V +K + Q +L + + Y+V YV NL + E L+K FS G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 68.5514 bits (166), Expect = 5.013e-11 Identity = 50/176 (28.41%), Postives = 81/176 (46.02%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 +++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+NG + GR++ V + + +L E N VY+ N + + E LK F + G LS KV + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13 Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV+ + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 70.0922 bits (170), Expect = 1.723e-11 Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK+ F + G LS KV + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13 Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV+ + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 69.707 bits (169), Expect = 2.250e-11 Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK+ F + G LS KV + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13 Identity = 45/174 (25.86%), Postives = 87/174 (50.00%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 742 +++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++ G EI GR I ++ T KP D + + + T +++GNL+ + + + F++ G+V+S ++ P T + GFG+V F L ++ + +R++ Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT--LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13 Identity = 55/154 (35.71%), Postives = 78/154 (50.65%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIG------GREIKVNITEKPLAQVDLSLLQAEDSNFVD-STYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 VY+ N+P+ I +DEL K ++G + A V+ D+ +G SR F FV + E A +EK+NG +G GR K + E+ L + Q S F +Y+ NL +V E LK+ FSE G V S KV + S GFGFV + Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRR---KFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKV-MMNSQGLSRGFGFVAY 375 HSP 2 Score: 69.707 bits (169), Expect = 2.250e-11 Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN--ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 V+I N+ +IDN L + G + +V D GRS+ + FV + E A A I+KLNG + +++ V + + A+ +S V S VYV NL K +T + LKK F + G + SA V + + S FGFV F Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR--------SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK-DQSGNSRSFGFVNF 272
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV+ + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 69.3218 bits (168), Expect = 2.939e-11 Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK F + G LS KV + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-AQVDLSLLQAEDSNFVDSTYK---VYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV+ + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 69.3218 bits (168), Expect = 2.939e-11 Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK F + G LS KV + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 The following BLAST results are available for this feature:
BLAST of FC871834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871834 ID=FC871834; Name=FC871834; organism=Citrus sinensis; type=EST; length=826bpback to top |