FC871834

Overview
NameFC871834
Unique NameFC871834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.250e-11
Identity = 39/145 (26.90%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664
            +  +P+N+  DE   +    G +E  +++ DK TG+S  + FV      DA+  I  LNG ++  + IKV+      A +        D+N       +YV  L KT++ + +++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.250e-11
Identity = 43/145 (29.66%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664
            +  +P+N+  DEL  +    G VE A++I DK  G S  + FV   T +DA   I  LNG  +  + IKV+   +P ++V       +D+N       +Y+  L +T+T + ++  FS  G++++++V     T  S G  F+ F
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 53/177 (29.94%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748
            ++I N+   IDN  L +     G V   +V  D+  G SR F FV  K   DA   IE +NG  + G E+ V  ++ +K      +S L+   +NF +    +YV N+    T E  ++ FS+ G+++SA + +     K  GFGFV F            LN    + Q + V +A
Sbjct:  140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD----RISKLEEAKANFTN----IYVKNIDVETTDEEFEQLFSQYGEIVSAALEK-DAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 2
Query:  224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDL-SLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E A   I+ +NG  +  +++ V      +A+ D  S  +   +NF +    VYV N+ +  T E  +  F + G++ SA ++R   + KS GFGFV F            LN+   +GQ++ V +A
Sbjct:  145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG---HHIAKKDRQSKFEEMKANFTN----VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRA 312          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = 2
Query:  206 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDST----------YKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 739
            SEF   VYI N   ++D++ L  +  ++G     +V+ D  +G+S+ F FV+  + E A   +E++NG +I G+ I V   +K + +      QAE     +             K+Y+ NL  T+  E L+  FS  G +   KV +  G SK  GFG + F            +N  +L  + + +
Sbjct:  187 SEFTN-VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVER------QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+      A +        D+N       +YV  L KT+T + L++ FS+ G+++++++     T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 52/172 (30.23%), Postives = 78/172 (45.35%), Query Frame = 2
Query:  224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 739
            +Y+G++  ++    L  I    GAV    V  D  T  S  +A+V     + A   IEKLN T I G+  ++  +++     D SL +    N       +++ NL   + ++ L   FS  G +LS+KV+    T KS GFG+V F            LN  LL GQ I V
Sbjct:   37 LYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-----DPSLRKKGAGN-------IFIKNLHPDIDNKALYDTFSVFGNILSSKVA-TDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195          
The following BLAST results are available for this feature:
BLAST of FC871834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ELAV3_MOUSE2.250e-1126.90ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV1_HUMAN2.250e-1129.66ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
PABP_KLULA2.939e-1129.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM2.939e-1128.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENTR2.939e-1128.28ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
PAB4L_HUMAN3.838e-1127.13Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
ELAV2_PONAB3.838e-1128.28ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE3.838e-1128.28ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN3.838e-1128.28ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
PABP_CANGA5.013e-1130.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DD04FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871834 ID=FC871834; Name=FC871834; organism=Citrus sinensis; type=EST; length=826bp
TTTAATACTGTCTCAACAAAATCTCATTTTTTCAAAAACCCACTTCACAT
TTCAATCAAGACAACCAATTCTTCAAATCAGATTTCCAAAACTCTCATAT
TCTTTGCACAATCTCAAGACAGCAAGCATCGAAGACTCCACTACGAGACT
CTTTGCAGTAGCTGAAGAAACTGCATCATCATCATCATCATCGGTTGACA
CGCCTTCGGAGTTTGCTAGGAGGGTCTATATTGGTAACATTCCTAGAAAT
ATTGATAATGATGAACTTACAAAGATTGTTCAAGAACACGGCGCCGTCGA
GAAAGCTGAGGTTATTTATGATAAGTACACTGGAAGAAGTCGCCGATTTG
CCTTTGTTACGATGAAAACTGTTGAGGATGCAAATGCAGTGATTGAGAAA
CTGAACGGCACTGAAATTGGTGGACGTGAGATCAAAGTAAACATCACAGA
GAAACCTTTGGCGCAAGTTGATTTGTCCCTCCTCCAAGCAGAGGATTCTA
ACTTTGTGGACAGTACGTATAAAGTTTATGTAGGAAATCTTGCAAAGACA
GTGACCTCGGAAATGCTCAAAAAAAATTTCTCTGAGAAGGGACAGGTTCT
TAGTGCAAAGGTTTCGCGGGTTCCAGGAACATCAAAATCATCTGGTTTTG
GGTTTGTTACCTTCTCTTCAGAAGAGGATGCTGAAGCTGCCATCTCTTCT
CTTAACAATTCTCTGCTGGAAGGGCAACGAATTCGTGTAAACAAGGCATA
GTATGTGACCCGTGGCAGCATCTATAGGATTCTGGAGAGTGTTCTACTTG
TTGCAACCATTGTATTTGAAATGTAA
back to top