FC871834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.250e-11 Identity = 39/145 (26.90%), Postives = 73/145 (50.34%), Query Frame = 2 Query: 230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 + +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG ++ + IKV+ A + D+N +YV L KT++ + +++ FS+ G+++++++ T S G GF+ F Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.250e-11 Identity = 43/145 (29.66%), Postives = 74/145 (51.03%), Query Frame = 2 Query: 230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 + +P+N+ DEL + G VE A++I DK G S + FV T +DA I LNG + + IKV+ +P ++V +D+N +Y+ L +T+T + ++ FS G++++++V T S G F+ F Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11 Identity = 53/177 (29.94%), Postives = 82/177 (46.33%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 ++I N+ IDN L + G V +V D+ G SR F FV K DA IE +NG + G E+ V ++ +K +S L+ +NF + +YV N+ T E ++ FS+ G+++SA + + K GFGFV F LN + Q + V +A Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD----RISKLEEAKANFTN----IYVKNIDVETTDEEFEQLFSQYGEIVSAALEK-DAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11 Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDL-SLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 748 V+I N+ IDN L G + +V D++ G S+ + FV +T E A I+ +NG + +++ V +A+ D S + +NF + VYV N+ + T E + F + G++ SA ++R + KS GFGFV F LN+ +GQ++ V +A Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG---HHIAKKDRQSKFEEMKANFTN----VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRA 312
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11 Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2 Query: 230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 + +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ A + D+N +YV L KT+T + L++ FS+ G+++++++ T S G GF+ F Sbjct: 71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11 Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = 2 Query: 206 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDST----------YKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 739 SEF VYI N ++D++ L + ++G +V+ D +G+S+ F FV+ + E A +E++NG +I G+ I V +K + + QAE + K+Y+ NL T+ E L+ FS G + KV + G SK GFG + F +N +L + + + Sbjct: 187 SEFTN-VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVER------QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11 Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2 Query: 230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 + +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ A + D+N +YV L KT+T + L++ FS+ G+++++++ T S G GF+ F Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11 Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2 Query: 230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 + +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ A + D+N +YV L KT+T + L++ FS+ G+++++++ T S G GF+ F Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11 Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 2 Query: 230 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTF 664 + +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ A + D+N +YV L KT+T + L++ FS+ G+++++++ T S G GF+ F Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------RDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC871834 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11 Identity = 52/172 (30.23%), Postives = 78/172 (45.35%), Query Frame = 2 Query: 224 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 739 +Y+G++ ++ L I GAV V D T S +A+V + A IEKLN T I G+ ++ +++ D SL + N +++ NL + ++ L FS G +LS+KV+ T KS GFG+V F LN LL GQ I V Sbjct: 37 LYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-----DPSLRKKGAGN-------IFIKNLHPDIDNKALYDTFSVFGNILSSKVA-TDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195 The following BLAST results are available for this feature:
BLAST of FC871834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871834 ID=FC871834; Name=FC871834; organism=Citrus sinensis; type=EST; length=826bpback to top |