EH406435

Overview
NameEH406435
Unique NameEH406435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_MORSP (Triosephosphate isomerase OS=Moraxella sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 318
            +++AYEPVWAIGTGKV T A+    H  +++ L     A+  ++  ++YGGSVN  N    AA P +DG LVGGASLK +    I +A
Sbjct:  178 LIIAYEPVWAIGTGKVPTVAEVSATHKHIKQTLAG--FADSLSNMTVLYGGSVNADNANSFAADPMIDGALVGGASLKADSFLTIATA 263          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_DINSH (Triosephosphate isomerase OS=Dinoroseobacter shibae (strain DFL 12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   52 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 309
            N+V+AYEPVWAIGTG+V +  Q  EVH  +R  L+      V  S R++YGGSV      E+ A  +VDG LVGGASLK  +F  II
Sbjct:  157 NLVVAYEPVWAIGTGRVPSVDQIGEVHDFIRARLEQRFGEGVGRSVRLLYGGSVKPGIAAEIFAVSNVDGALVGGASLKAADFTGII 243          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   49 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 294
            + +V+AYEP+WAIGTGK AT  QA E    +R  +K      VA   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:  159 EKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   49 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 309
            +N+V+AYEP+WAIGTG+     +A  V   +R+ L +       A   I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:  162 ENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   52 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 312
            ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   52 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 312
            ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   52 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 312
            ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_PSYCK (Triosephosphate isomerase OS=Psychrobacter cryohalolentis (strain K5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 318
            +++AYEPVWAIGTGKV T A+    H  +++ L     A+  ++  ++YGGSVN  N    AA P +DG LVGGASLK +    I +A
Sbjct:  178 LIIAYEPVWAIGTGKVPTVAEVSATHKHIKQILAG--FADSLSNMTVLYGGSVNADNANSFAADPMIDGALVGGASLKADSFLTIATA 263          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_PROMM (Triosephosphate isomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   49 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRII-YGGSVNGANCKELAAQPDVDGFLVGGASLKPE 294
            D +V+AYEP+WAIGTGK    ++A  +   +R+W        V AS  II YGGSV   N  EL A  D+DG LVGGASL PE
Sbjct:  158 DKLVVAYEPIWAIGTGKTCEASEANRICGLIRRW--------VGASELIIQYGGSVKPGNIDELMAMSDIDGVLVGGASLDPE 232          
BLAST of EH406435 vs. ExPASy Swiss-Prot
Match: TPIS_FINM2 (Triosephosphate isomerase OS=Finegoldia magna (strain ATCC 29328) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   19 KAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 294
            K I EK      +V+AYEP+WAIGTGK A+   AQ +   +R  L    S ++A S RI YGGSV   N  ++ ++ D+DG LVGGASL+ E
Sbjct:  151 KGINEK-DIMSKLVIAYEPIWAIGTGKTASSDDAQSMCKFIRNLLSKMYSKDLADSVRIQYGGSVKPENILDIMSKEDIDGALVGGASLEAE 241          
The following BLAST results are available for this feature:
BLAST of EH406435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MORSP3.028e-1445.45Triosephosphate isomerase OS=Moraxella sp. GN=tpiA... [more]
TPIS_DINSH3.028e-1450.57Triosephosphate isomerase OS=Dinoroseobacter shiba... [more]
TPIS_CLOB13.028e-1450.00Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_SYNJB3.955e-1447.73Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_STRA53.955e-1447.25Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA33.955e-1447.25Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA13.955e-1447.25Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_PSYCK3.955e-1445.45Triosephosphate isomerase OS=Psychrobacter cryohal... [more]
TPIS_PROMM3.955e-1450.60Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_FINM23.955e-1446.74Triosephosphate isomerase OS=Finegoldia magna (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DC12FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406435 ID=EH406435; Name=EH406435; organism=Citrus sinensis; type=EST; length=556bp
GTTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGA
CAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGG
TTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGG
CTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTA
CGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTG
ATGTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATC
GATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAG
CTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAA
CTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAG
TATAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAG
TGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCC
TTCTTG
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