CX300910

Overview
NameCX300910
Unique NameCX300910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURCA (Type III pantothenate kinase OS=Burkholderia cenocepacia (strain AU 1054) GN=coaX PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.394e-17
Identity = 58/137 (42.34%), Postives = 76/137 (55.47%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHDGRDWLL--------RDALPHVDLSAFRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWREL-GRACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D R  L+        RD     D S   LP    P+   I+NVAGA+VA  L   L    PG+P   +RA  ++CG+ NGY  P QLG+DRWA L+GA     G   L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADARRSLVDTGAFGHTRDGGADPDWS--HLPR---PRGAWISNVAGADVAARLDALLDARWPGLPRTTIRARPVQCGVTNGYTTPEQLGSDRWAGLIGAHAAFPGEHLLIATFGTATTLEALRAD 139          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURCJ (Type III pantothenate kinase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=coaX PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.126e-17
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHDGRDWLL--------RDALPHVDLSAFRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWREL-GRACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D R  L+        RD     D S  RLP    P+   I+NVAGA+VA  +   L    PG+P   +R+   +CG+ NGY  P QLG+DRWA L+GA     G   L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADARRTLVDTGAFGHTRDGGADPDWS--RLPR---PRGAWISNVAGADVAARIDALLDARWPGLPRTTIRSRPAQCGVTNGYTTPEQLGSDRWAGLIGAHAAFPGEHLLIATFGTATTLEALRAD 139          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURCC (Type III pantothenate kinase OS=Burkholderia cenocepacia (strain MC0-3) GN=coaX PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHDGRDWLL--------RDALPHVDLSAFRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWREL-GRACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D R  L+        RD     D S   LP    P+   I+NVAGA+VA  L   L    PG+P   +R+  ++CG+ NGY  P QLG+DRWA L+GA     G   L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADARRSLVDTGAFGHTRDGGADPDWS--HLPR---PRGAWISNVAGADVAARLDALLDARWPGLPRTTIRSRPVQCGVTNGYTTPEQLGSDRWAGLIGAHAAFPGEHLLIATFGTATTLEALRAD 139          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURA4 (Type III pantothenate kinase OS=Burkholderia ambifaria (strain MC40-6) GN=coaX PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 58/137 (42.34%), Postives = 75/137 (54.74%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHDGRDWLL--------RDALPHVDLSAFRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWREL-GRACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D R  L+        RD     D SA  LP    P    I+NVAGA+VA  L   L    PG+P   +R+   +CG+ NGY  P QLG+DRWA L+GA     G   L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADARRTLVDTGAFGHTRDGGADPDWSA--LPR---PHGAWISNVAGADVAARLDALLDARWPGLPRTTIRSRPAQCGVTNGYTTPDQLGSDRWAGLIGARAAFPGEHLLIATFGTATTLEALRAD 139          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURTA (Type III pantothenate kinase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=coaX PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.965e-17
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHD-GRDWLLRDALPHVDLSA--FRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWREL-GRACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D GR ++   A  H D +     LPA   P+   I+NVAG   A  +   +    P +P   +RA A +CG+ NGYA PA+LG+DRWA L+GA     G   L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADTGRHFVTSGAFEHADDTPDWSTLPA---PRGAWISNVAGDAAAARIDALIDAHWPALPRTVVRACAAQCGVTNGYAEPARLGSDRWAGLIGAHAAFPGEHLLIATFGTATTLEALRAD 136          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURVG (Type III pantothenate kinase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=coaX PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17
Identity = 58/137 (42.34%), Postives = 76/137 (55.47%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHDGRDWLL--------RDALPHVDLSAFRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWREL-GRACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D +  L+        RD     D SA  LP    PQ   I+NVAGA+VA  L   L    P +P   +RA A +CG+ NGY +P QLG+DRWA L+GA         L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADAQRTLVASGAFGHTRDGGADPDWSA--LPH---PQGAWISNVAGADVAARLDALLDAQWPALPRTTIRARAAQCGVTNGYTSPEQLGSDRWAGLIGARAAFPDEHLLIATFGTATTLEALRAD 139          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURS3 (Type III pantothenate kinase OS=Burkholderia sp. (strain 383) GN=coaX PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHDGRDWLL--------RDALPHVDLSAFRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWREL-GRACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D +  L+        RD     D S   LP    P+   I+NVAGA+VA  L T L    PG+P   +R+   +CG+ NGY  P QLG+DRWA L+GA     G   L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADAQRTLVETGAFGHTRDGGADPDWST--LPR---PRGAWISNVAGADVAARLDTLLDARWPGLPRTTIRSRHTQCGVTNGYTTPDQLGSDRWAGLIGAHAAFPGEHLLIATFGTATTLEALRAD 139          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_RALSO (Type III pantothenate kinase OS=Ralstonia solanacearum GN=coaX PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 58/144 (40.28%), Postives = 71/144 (49.31%), Query Frame = -1
Query:   22 IDAGNTRIKFG-----------CHDGRDWLLRDALPHVDLSAF-------RLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVG---AWRELGRACLVVSAGTATTVD 390
            IDAGNTRIK+               G  W    A PH  L+            A   P  V I+ VAG  +  AL  R+A V  G  +  + +EA   GLRNGY +PAQLG DRW   VG   AW +   A L+V+AGTATT+D
Sbjct:   16 IDAGNTRIKWAWTAADVAPPAVAPGGTPWQHAGARPHDQLAELVEDWRDCHAGAGMAPPDVWISVVAGPALRDALCARIARVFDGARLRIVASEAAAAGLRNGYRDPAQLGTDRWVGAVGARHAWPD--TALLLVTAGTATTLD 157          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURMA (Type III pantothenate kinase OS=Burkholderia mallei GN=coaX PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHD-GRDWLLRDALPHVDLSAFRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWRELG-RACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D  R ++   A  H    A       VP+   I+NVAG   A  +   +    P +P   +RA A +CG+ NGYA PA+LG+DRWA L+GA         L+ + GTATT++  RA+
Sbjct:    5 IDAGNSRIKWALADTARHFVTSGAFEHAS-DAPDWSTLPVPRGAWISNVAGDAAAARIDALIEARWPALPRTVVRASAAQCGVTNGYAEPARLGSDRWAGLIGAHAAFADEHLLIATFGTATTLEALRAD 133          
BLAST of CX300910 vs. ExPASy Swiss-Prot
Match: COAX_BURPS (Type III pantothenate kinase OS=Burkholderia pseudomallei GN=coaX PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.240e-15
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = -1
Query:    7 IDAGNTRIKFGCHD-GRDWLLRDALPHVDLSA--FRLPAACVPQRVLIANVAGAEVAQALRTRLAVVAPGVPVEYLRAEALRCGLRNGYANPAQLGADRWAALVGAWRELG-RACLVVSAGTATTVDFPRAE 390
            IDAGN+RIK+   D  R ++   A  H   +     LPA   P+   I+NVAG   A  +   +    P +P   +RA A +CG+ NGYA PA+LG+DRWA L+GA         L+ + GTATT++  RA+
Sbjct:    8 IDAGNSRIKWALADTARHFVTSGAFEHASDAPDWSTLPA---PRGAWISNVAGDAAAARIDALIEARWPALPRTVVRASAAQCGVTNGYAEPARLGSDRWAGLIGAHAAFADEHLLIATFGTATTLEALRAD 136          
The following BLAST results are available for this feature:
BLAST of CX300910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
COAX_BURCA2.394e-1742.34Type III pantothenate kinase OS=Burkholderia cenoc... [more]
COAX_BURCJ3.126e-1741.61Type III pantothenate kinase OS=Burkholderia cepac... [more]
COAX_BURCC5.333e-1741.61Type III pantothenate kinase OS=Burkholderia cenoc... [more]
COAX_BURA45.333e-1742.34Type III pantothenate kinase OS=Burkholderia ambif... [more]
COAX_BURTA6.965e-1741.67Type III pantothenate kinase OS=Burkholderia thail... [more]
COAX_BURVG9.096e-1742.34Type III pantothenate kinase OS=Burkholderia vietn... [more]
COAX_BURS39.096e-1741.61Type III pantothenate kinase OS=Burkholderia sp. (... [more]
COAX_RALSO7.700e-1640.28Type III pantothenate kinase OS=Ralstonia solanace... [more]
COAX_BURMA1.313e-1539.23Type III pantothenate kinase OS=Burkholderia malle... [more]
COAX_BURPS2.240e-1539.39Type III pantothenate kinase OS=Burkholderia pseud... [more]

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Properties
Property NameValue
Genbank descriptionC08003F02SK PhyRootSw1 Citrus sinensis cDNA clone C08003F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300910 ID=CX300910; Name=CX300910; organism=Citrus sinensis; type=EST; length=390bp
CAGGAATTCGGCACGAGGGAAATCGACGGTGGTCGCGGTGCCGGCACTGA
CGACGAGGCAGGCACGGCCGAGTTCACGCCACGCACCGACCAGCGCGGCC
CAGCGATCCGCGCCCAACTGCGCCGGGTTGGCGTAACCGTTGCGCAACCC
GCAACGCAAGGCCTCAGCGCGCAGGTATTCTACCGGCACGCCCGGCGCCA
CCACCGCTAGCCGCGTCCGCAAGGCCTGCGCCACCTCGGCACCAGCGACA
TTGGCGATCAGCACGCGCTGCGGCACGCACGCAGCCGGCAGGCGGAAGGC
GGAGAGATCTACATGCGGCAAAGCATCGCGCAGCAACCAGTCGCGGCCGT
CATGGCAGCCGAATTTGATGCGCGTGTTACCGGCGTCGAT
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