EY665024

Overview
NameEY665024
Unique NameEY665024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665024 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.916e-18
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:   39 RVNLLLKTPADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPIFFYSTLWESDDWATRGGLEKIDWSKAPFYAYYIDFDIEGC--PFPGPANCASNPGNWWEANNYQALTAMEARIYRWVRLNHMIYDYCTDKSRYPVPPPEC 482
            R  L      DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q +F   ++         G +  ID  + P+ A +    IEGC   F G   C ++P  WW   N + L++ E  +Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:  127 RFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
BLAST of EY665024 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.725e-18
Identity = 52/154 (33.77%), Postives = 73/154 (47.40%), Query Frame = 3
Query:   39 RVNLLLKTPADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPIFFYSTLWESDDWATRGGLEKIDWSKAPFYAYYIDFDIEGC---PFPGPANCASNPGNWWEANNYQALTAMEARIYRWVRLNHMIYDYCTDKSRYPVPPPECL 485
            R NL      D+H Y+ILW+  HI+FYVD+VPIR  K +      FP  +P+  YST+W+   WAT GG   +++  AP+ + + D  + GC   P     +C               +T  +       R  HM Y YC D  RY V   EC+
Sbjct:  141 RYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQ--NLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291          
The following BLAST results are available for this feature:
BLAST of EY665024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH11_ARATH3.916e-1836.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH8.725e-1833.77Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-073-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665024 ID=EY665024; Name=EY665024; organism=Citrus sinensis; type=EST; length=793bp
GCCGGNATTCACACCCCGACCCAGCGTCCGANAGAACTAGAGTGAACCTT
TTGTTAAAAACTCCTGCAGATTATCACCTTTACACTATTCTCTGGAACCA
TCACCATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAA
ACAGTGGAAGGGCTCCATTTCCAATGAACCAACCCATTTTTTTTTATTCA
ACGCTGTGGGAATCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAAAT
AGATTGGAGCAAAGCTCCTTTTTATGCTTATTACATAGACTTTGATATTG
AGGGCTGCCCATTTCCTGGACCAGCAAACTGTGCCTCGAACCCAGGTAAC
TGGTGGGAGGCAAATAATTATCAAGCCCTCACCGCCATGGAAGCAAGAAT
ATACAGATGGGTTCGTCTCAACCACATGATCTATGATTATTGCACTGATA
AATCAAGATACCCAGTACCCCCACCGGAATGCCTTGCCGGCATATAAATT
CAACCCGCCAATTAATTAAGCAGTTGGACGGTACTCCATATCCGTATCAT
ATCATGTATATTACTTCACGTACACGTCCTTTGTATTATTCCCTATTCGT
GTGAAAAGACTTATACGCATATCAAGGGAGGGGCGGGAGGGGAAATAAAC
ATTGTGTGCATTTAAATGTAATTATGGGAGTGGGAAATATGTGGGTTTTC
TGCTCTGCTTGTACCATATATAAGTCTGAATTTGATGCACAGTATTCTGT
GCCAATAAAAGCTTCTTCATAAAAAAAAAAAAAAAAAAAAAAA
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