FC871830

Overview
NameFC871830
Unique NameFC871830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.670e-37
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  QTK IA+ + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR+WLK NVS  VA S RIIYGGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:  143 VFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.100e-37
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 2
Query:    8 EQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 328
            EQ KA A+ + +W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ + T KK
Sbjct:  204 EQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKK 311          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.040e-36
Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 301
            V E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:  142 VFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.359e-36
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 2
Query:    8 EQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 328
            +Q KA A+ I++W NVV+AYEPVWAIGTGKVA+P QAQEVHA +R WLK NVSA+VA++ RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S T KK
Sbjct:  188 KQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKK 295          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.027e-36
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 2
Query:   11 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 328
            Q KA A+ + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  206 QLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.954e-36
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q  A+A++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  143 VENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 2
Query:    2 VAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            V  Q  A+AE++S   W+ VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL + +S E A + R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  142 VTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 66/101 (65.35%), Postives = 87/101 (86.14%), Query Frame = 2
Query:   11 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 313
            Q +A+++ IS+W +VV+AYEPVWAIGTGKVATP QA++VH  +R WL +NVS +VAASTRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:  141 QLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 146.362 bits (368), Expect = 9.738e-35
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 2
Query:    2 VAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 307
            V  Q  AIA+K+ NW  +V+AYEPVWAIGTGK ATP QAQEVHAE+RKW  + + A VA   R+IYGGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:  143 VVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
BLAST of FC871830 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.272e-34
Identity = 74/96 (77.08%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   44 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 328
            WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S T KK
Sbjct:  159 WDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKK 254          
The following BLAST results are available for this feature:
BLAST of FC871830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPISB_DANRE4.670e-3772.12Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIC_FRAAN6.100e-3768.52Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_LATCH1.040e-3671.00Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIC_SECCE1.359e-3669.44Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH3.027e-3669.16Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIS_NEUCR3.954e-3667.31Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_PARBA7.456e-3565.09Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_GRAVE7.456e-3565.35Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_SCHPO9.738e-3565.69Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_STELP1.272e-3477.08Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871830 ID=FC871830; Name=FC871830; organism=Citrus sinensis; type=EST; length=577bp
TGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACA
ATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
GCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCT
TAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTGAT
GTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATCGA
TATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAGCT
ACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAACT
AGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAGTA
TAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAGTG
GGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCCTT
CTTGCAAAAAAAAAAAAAAAAAAAAAA
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