CX043376

Overview
NameCX043376
Unique NameCX043376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 4.282e-66
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL REIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 5.593e-66
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 5.593e-66
Identity = 128/136 (94.12%), Postives = 131/136 (96.32%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK DLRFQS AV ALQEA+E+YLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 249.98 bits (637), Expect = 7.304e-66
Identity = 127/136 (93.38%), Postives = 131/136 (96.32%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 7.304e-66
Identity = 128/136 (94.12%), Postives = 131/136 (96.32%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK +QLARRIR ERA
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 7.304e-66
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.246e-65
Identity = 126/136 (92.65%), Postives = 130/136 (95.59%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL+REIAQDFKTDLRFQS AV+ALQEA E+YLVGLFEDTNLC IHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 2.776e-65
Identity = 125/135 (92.59%), Postives = 132/135 (97.78%), Query Frame = -1 
Query:  134 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGER 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK+DLRFQS AVLALQEAAEAY+VGLFEDTNLCAIHAKRVTIMPK IQLARRIRGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.055e-64
Identity = 125/136 (91.91%), Postives = 129/136 (94.85%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ  AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.055e-64
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = -1 
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAI AKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135
The following BLAST results are available for this feature:
BLAST of CX043376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_PONAB4.282e-6694.12Histone H3.3 OS=Pongo abelii PE=2 SV=3[more]
H3_STRPU5.593e-6694.12Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H32_LILLO5.593e-6694.12Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H3_CAEEL7.304e-6693.38Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H3L1_ARATH7.304e-6694.12Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H31_CHLRE7.304e-6695.59Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H31T_HUMAN1.246e-6592.65Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3_GRIJA2.776e-6592.59Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H3L_XENLA1.055e-6491.91Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H33_CHLRE1.055e-6494.85Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10F07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F07-L14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043376 ID=CX043376; Name=CX043376; organism=Citrus sinensis; type=EST; length=622bp
TTATCTAACAAATATCAAATTCCAAATATTCTTCAATCCATCATATCATT
CTTTACATGTAAAAACCGGAATAAAGAAAAACTAGCAAACTAAATAGGAA
ACTGACGACTACATAAGGAATCACAAATTAAGCACGCTCGCCTCGGATTC
GCCTTGCCAGTTGAATACCCTTGGGCATAATGGTGACTCGCTTGGCATGG
ATAGCACAAAGGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCTGC
CGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGTCT
TGAAATCTTGAGCAATTTCACGAACCAGCCGCTGAAAAGGCAGCTTGCGG
ATCAAAAGCTCAGTGCTCTTCTGATATTTGCGGATTTCACGGAGGGCGAC
AGTTCCTGGACGGTAACGATGAGGCTTCTTGACTCCACCAGTTGTTGGAG
CAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTCCT
CCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAATC
ACCAAACACAAACTGCAAAATGCACAGATCTGAATGCAACTTCAAATAAA
TAAATAAAATGAAGACTTCATT
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