CX043376

Overview
NameCX043376
Unique NameCX043376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 1.378e-64
Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKS PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQE AEAYLVG+FEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 1.799e-64
Identity = 126/136 (92.65%), Postives = 130/136 (95.59%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTAR STGGKAPRKQLA KAAR+SAP TGGVKKPHR+RPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRGERA 136          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 3.393e-63
Identity = 123/135 (91.11%), Postives = 128/135 (94.81%), Query Frame = -1
Query:  134 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGER 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRVTI PK I LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGER 135          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.393e-63
Identity = 122/136 (89.71%), Postives = 130/136 (95.59%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  K IQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 5.788e-63
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = -1
Query:  134 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGER 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHAKRVTI PK I LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 5.788e-63
Identity = 121/136 (88.97%), Postives = 128/136 (94.12%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PK +QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 7.559e-63
Identity = 124/136 (91.18%), Postives = 127/136 (93.38%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKA    A  TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK +QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 7.559e-63
Identity = 121/136 (88.97%), Postives = 130/136 (95.59%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  K +QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 9.872e-63
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRK +ATKA RK+AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CX043376 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.199e-62
Identity = 122/136 (89.71%), Postives = 127/136 (93.38%), Query Frame = -1
Query:  131 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERA 538
            MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTNL AIHAKRVTI PK I LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of CX043376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33B_LILLO1.378e-6492.70Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3L5_ARATH1.799e-6492.65Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H32_USTMA3.393e-6391.11Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H31_LODEL3.393e-6389.71Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MORAP5.788e-6391.11Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_SCHPO5.788e-6388.97Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H32_CICIN7.559e-6391.18Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H31_CANAL7.559e-6388.97Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H3_MASBA9.872e-6391.18Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H31_USTMA2.199e-6289.71Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10F07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F07-L14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043376 ID=CX043376; Name=CX043376; organism=Citrus sinensis; type=EST; length=622bp
TTATCTAACAAATATCAAATTCCAAATATTCTTCAATCCATCATATCATT
CTTTACATGTAAAAACCGGAATAAAGAAAAACTAGCAAACTAAATAGGAA
ACTGACGACTACATAAGGAATCACAAATTAAGCACGCTCGCCTCGGATTC
GCCTTGCCAGTTGAATACCCTTGGGCATAATGGTGACTCGCTTGGCATGG
ATAGCACAAAGGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCTGC
CGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGTCT
TGAAATCTTGAGCAATTTCACGAACCAGCCGCTGAAAAGGCAGCTTGCGG
ATCAAAAGCTCAGTGCTCTTCTGATATTTGCGGATTTCACGGAGGGCGAC
AGTTCCTGGACGGTAACGATGAGGCTTCTTGACTCCACCAGTTGTTGGAG
CAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTCCT
CCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAATC
ACCAAACACAAACTGCAAAATGCACAGATCTGAATGCAACTTCAAATAAA
TAAATAAAATGAAGACTTCATT
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