CX047188

Overview
NameCX047188
Unique NameCX047188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PGVK++E+K+EV E  VL +S           D+W RVERS G+F  +F+LP N  +D V+  +ENGVL +++ K   A++K P V  I
Sbjct:   47 KETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPK---AEVKKPEVKAI 145          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PGVK++E+K+EV E  VL +S           D+W RVERS G+F  +F+LP N  +D V+  LENGVL +++ K   A++K P V  I
Sbjct:   48 KETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPK---AEVKKPEVKAI 146          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PGVK++E+K+EV E  VL +S           D+W RVERS G+F  +F+LP N  +D V+  +ENGVL +++ K   A++K P V  I
Sbjct:   48 KETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPK---AEVKKPEVKAI 146          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  313 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGIAG 624
            KETPE H +  D+PG+K++E+K+EV + RVL++S           D W RVERS GKF  +F+LP N  +D V+  +ENGVL + + K    +    + + I+G
Sbjct:   50 KETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVVPKEEEEKKPMVKAIDISG 153          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H   +D+PGVK++E+K+EV +  VL VS           D+W RVERS GKF  +F+LP +  ++ V+  LENGVL +++ K   A++K P V  I
Sbjct:   49 KETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPK---AEVKKPEVKAI 147          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K++E+K+++ ++RVL++S           D W RVERS GKF  +F+LP N  ++ V+  +ENGVL +++ K    ++K P V  I
Sbjct:   52 KETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPK---EEVKKPDVKAI 150          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K++E+K+E+ + RVL++S           D W RVERS GK   +F+LP N  +D V+  +ENGVL +++ K    +IK P V  I
Sbjct:   51 KETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPK---EEIKKPDVKAI 149          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K++E+K+++ +++VL++S           D W RVERS GKF  +F+LP N  ++ V+  +ENGVL +++ K    ++K P V  I
Sbjct:   59 KETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPK---EEVKKPDVKAI 157          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  361 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKK 624
            KETPE H    D+PGVK++E+K+EV +  VLR+S           D W RVERS G+F  +F+LP N  +D V+  +ENGVL +++ K
Sbjct:   60 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPK 147          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 47/130 (36.15%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  265 KETPEGHFIMLDVPGVKRDELKIEVGE-NRVLRVSXXXXXXXXXXGDQ-------WPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI--AGGEDETAKLQRGVRQEL 624
            KETPE H + +DVPGV+R ++++EV E +RVLRVS           ++       W R ER+ G+FW +F++P   D+  V  +L++GVL +++ K+   + + PRVV I  AG  D  A++ +  + E+
Sbjct:   77 KETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVTVPKVPGHRGREPRVVAIDGAGAGDMEAEVVKASKAEM 206          
The following BLAST results are available for this feature:
BLAST of CX047188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HS16C_ORYSJ3.715e-1744.1216.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS16A_ORYSJ3.715e-1745.1016.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS16B_ORYSJ6.336e-1744.1216.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP11_HELAN2.408e-1640.3817.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS16A_WHEAT2.408e-1644.1216.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP14_SOYBN4.107e-1640.2017.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOYBN4.107e-1642.1617.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP16_SOYBN5.364e-1639.2218.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_CHERU5.364e-1645.4518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS219_ORYSJ7.006e-1636.1521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047188 ID=CX047188; Name=CX047188; organism=Citrus sinensis; type=EST; length=624bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAAAGCTGTATCAGCTTCATGGGCT
GCCCCGTTATTTATACTTTAATAGGGGAAAAAAAATGTTACCAAAAAAAA
TTATTTTACAGTATTAAACTTATTACAAAACAGCAAATTTTGCCTCAAAC
GAAAACAACGACAAAACAAAAGTAAAAAACAAAGCTAGCTCAACATTGCA
GTAAAACCCCCCTTATTCCCCACACCACACTGACATAAACCCAAGGGGAG
GGAAAAAACCCCTAAAGCTCTTGCCTAACCCCCCTCTGCAGCTTGGCCGT
TTCGTCCTCCCCCCCCGCAATGCCGACAACTCTCGGACCTTTGATCTGGG
CAGGGGACAGCTTCTTCAAGGACAAAGGGAGCACACCATTTTCAAGCTTA
ACCTGGACAAAATCTAAATCCCCATTGGCCGGGAGCTTGAACTGCCCCCA
AAACTTGCCATGGGATCTCTCCACTCTGGGCCACTGATCGCCCTTCTTCC
CCCCCCCCCGTTTCCCCTCCCCGCTCACTCGCAGCACGCGATTCTCCCCA
ACTTCAATCTTCAGCTCGTCCCTCTTCACCCCCGGTACATCCAGCATTAT
GAAGTGACCCTCCGGGGTCTCTTT
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