CX047188

Overview
NameCX047188
Unique NameCX047188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  322 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQ--IKGPRVVG 624
            KETPE H    DVPG+K++E+K+EV +  VL++S           D+W RVERS GKF  +F+LP N   + ++  +ENGVL +++ K  P +  +K  +V G
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETP+ H    D+PG+K++E+K+E+ E +VL++S           D+W RVERS GKF  +F+LP N  +D V+  + NGV+ +++ K+   +IK P V  I
Sbjct:   55 KETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKV---EIKKPEVKAI 153          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  322 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQ--IKGPRVVG 624
            KETPE H    DVPG+K++E+K+EV +  VL++S           D+W RVERS GKF  +F+LP N   + ++  +ENGVL +++ K  P +  +K  ++ G
Sbjct:   52 KETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  322 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKL--SPAQIKGPRVVG 624
            +ETPE H    DVPG+K++E+K+EV +  +L++S           D W RVERS GKF  +F+LP N  ++ V+  +ENGVL +++ K+  S  ++K   + G
Sbjct:   54 RETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K++E+K+++ ++RVL++S           D W RVERS G F  +F+LP N  ++ V+  +ENGVL +++ K    ++K P V  I
Sbjct:   51 KETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPK---EEVKKPDVKAI 149          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  361 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKK 624
            KETPE H    DVPG+K++E+K+EV +  +L++S           DQW RVERS GKF  +F+LP N   + ++  +ENGVL +++ K
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPK 146          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETP+ H    D+PG+K++E+K+EV E +VL++S           ++W RVE S GKF  +F+LP N ++D V+  +ENGVL +++ K+   ++K P V  I
Sbjct:   57 KETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKV---EMKKPEVKSI 155          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PG+K++E+K+EV +  VL++S           D+W RVER+ GKF  +F+LP N  ++ V+  +ENGVL + + K   A  K P+V  I
Sbjct:   57 KETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPK---APEKKPQVKSI 155          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  322 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKK--LSPAQIKGPRVVG 624
            +ETPE H    D+PG+K++E+K+E+ E+ VL++S           D W RVERS G+F  +F+LP N  +D V+  +ENGVL +++ K     A +K  ++ G
Sbjct:   51 RETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  340 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIK 624
            KET E H    D+PG+K++E+K+E+ ++ VL++S           D W RVERS G+F  +FKLP N  +D V+  +ENGVL +++ K+  A+ K
Sbjct:   53 KETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKK 147          
The following BLAST results are available for this feature:
BLAST of CX047188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HS181_ORYSJ7.006e-1640.7818.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA9.149e-1640.2017.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS174_ORYSJ9.149e-1639.8117.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP17_ARATH1.195e-1538.8317.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP13_SOYBN1.195e-1539.2217.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ1.195e-1543.1817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_DAUCA2.038e-1540.2018.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ARATH2.662e-1541.1818.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17B_ARATH3.477e-1538.8317.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS178_ARATH3.477e-1541.0517.8 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047188 ID=CX047188; Name=CX047188; organism=Citrus sinensis; type=EST; length=624bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAAAGCTGTATCAGCTTCATGGGCT
GCCCCGTTATTTATACTTTAATAGGGGAAAAAAAATGTTACCAAAAAAAA
TTATTTTACAGTATTAAACTTATTACAAAACAGCAAATTTTGCCTCAAAC
GAAAACAACGACAAAACAAAAGTAAAAAACAAAGCTAGCTCAACATTGCA
GTAAAACCCCCCTTATTCCCCACACCACACTGACATAAACCCAAGGGGAG
GGAAAAAACCCCTAAAGCTCTTGCCTAACCCCCCTCTGCAGCTTGGCCGT
TTCGTCCTCCCCCCCCGCAATGCCGACAACTCTCGGACCTTTGATCTGGG
CAGGGGACAGCTTCTTCAAGGACAAAGGGAGCACACCATTTTCAAGCTTA
ACCTGGACAAAATCTAAATCCCCATTGGCCGGGAGCTTGAACTGCCCCCA
AAACTTGCCATGGGATCTCTCCACTCTGGGCCACTGATCGCCCTTCTTCC
CCCCCCCCCGTTTCCCCTCCCCGCTCACTCGCAGCACGCGATTCTCCCCA
ACTTCAATCTTCAGCTCGTCCCTCTTCACCCCCGGTACATCCAGCATTAT
GAAGTGACCCTCCGGGGTCTCTTT
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