CX047188

Overview
NameCX047188
Unique NameCX047188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  352 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSP 624
            KETPE H    DVPG+K++E+K+EV +  +L++S           D+W RVERS GKF  +F+LP N   + ++  +ENGVL +++ K  P
Sbjct:   57 KETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEP 147          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KETPE H    D+PGVK++E+K+EV +  VL VS           D+W RVERS GKF  +F+L  +  ++ V+  LENGVL +++ K   A++K P V  I
Sbjct:   49 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK---AEVKKPEVKAI 147          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 34/89 (38.20%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  358 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKL 624
            +ETPE H    D+PG++++E+K+EV +  +L++S           D+W RVERS GKF  +F+LP N  ++ ++  +ENGVL +++ K+
Sbjct:   55 RETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKV 143          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  337 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKK-------LSPAQIKG 624
            KET E H +  D+PG+K++E+K+++ ++RVL++S           D W RV+RS GKF  +F+LP N  ++ V+  +ENGVL +++ K       + P +I G
Sbjct:   52 KETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = -1
Query:  322 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKL----SPAQIKGPRVVG 624
            KET E H    D+PG+K++E+K+E+ ++ VL++S           D W RVERS G F  +F+LP N  +D V+  +ENGVL +++ K+      AQ+K   + G
Sbjct:   51 KETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  361 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKK 624
            KET   H  M D+PGV+R+E+++EV E +VLR+S          G++W RVERS  +F    +LP N + D V   L+NGVL +++ K
Sbjct:   75 KETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITIPK 162          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = -1
Query:  319 KETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGDQWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 624
            KE P  +  ++D+PG+K  ++K++V E+ VL +S          G ++ R+ER  GKF  +F LP N + D +    ++GVL ++++KL P + K P+ + +
Sbjct:   51 KEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEV 152          
BLAST of CX047188 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = -1
Query:  319 ETPEGHFIMLDVPGVKRDELKIEVGENRVLRVSXXXXXXXXXXGD-QWPRVERSHGKFWGQFKLPANGDLDFVQVKLENGVLPLSLKKLSPAQIKGPRVVGI 621
            E P  +  ++D+PG+K DE+K++V  + VL VS             ++ R+ER  GKF  +F+LP N DLD +     +GVL ++++KL P + K P+ + +
Sbjct:   51 EHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQV 152          
The following BLAST results are available for this feature:
BLAST of CX047188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HS177_ORYSJ3.477e-1541.7617.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT5.931e-1543.1416.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS17C_ARATH7.746e-1538.2017.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP15_SOYBN1.012e-1436.8917.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ARATH3.844e-1438.1017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS189_ORYSJ4.250e-1342.0518.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE3.978e-1132.3517.3 kDa class II heat shock protein OS=Solanum pe... [more]
HS176_ARATH3.978e-1134.3117.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047188 ID=CX047188; Name=CX047188; organism=Citrus sinensis; type=EST; length=624bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAAAGCTGTATCAGCTTCATGGGCT
GCCCCGTTATTTATACTTTAATAGGGGAAAAAAAATGTTACCAAAAAAAA
TTATTTTACAGTATTAAACTTATTACAAAACAGCAAATTTTGCCTCAAAC
GAAAACAACGACAAAACAAAAGTAAAAAACAAAGCTAGCTCAACATTGCA
GTAAAACCCCCCTTATTCCCCACACCACACTGACATAAACCCAAGGGGAG
GGAAAAAACCCCTAAAGCTCTTGCCTAACCCCCCTCTGCAGCTTGGCCGT
TTCGTCCTCCCCCCCCGCAATGCCGACAACTCTCGGACCTTTGATCTGGG
CAGGGGACAGCTTCTTCAAGGACAAAGGGAGCACACCATTTTCAAGCTTA
ACCTGGACAAAATCTAAATCCCCATTGGCCGGGAGCTTGAACTGCCCCCA
AAACTTGCCATGGGATCTCTCCACTCTGGGCCACTGATCGCCCTTCTTCC
CCCCCCCCCGTTTCCCCTCCCCGCTCACTCGCAGCACGCGATTCTCCCCA
ACTTCAATCTTCAGCTCGTCCCTCTTCACCCCCGGTACATCCAGCATTAT
GAAGTGACCCTCCGGGGTCTCTTT
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