EY664829

Overview
NameEY664829
Unique NameEY664829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 1.430e-92
Identity = 182/262 (69.47%), Postives = 203/262 (77.48%), Query Frame = 2
Query:  146 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRMGGTT----HSQLTTNG*RHTHEHC**PNLCPTPCMYNKXGDP 907
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI QRYREAADII KGKMCCL INDLDA AGRMGGTT    ++Q+      +  ++   P     P MYNK  +P
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN---PTNVQLPGMYNKEDNP 267          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.456e-90
Identity = 161/239 (67.36%), Postives = 185/239 (77.41%), Query Frame = 2
Query:  113 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRMGGTTHSQLTTN 826
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLI QRYREAAD+I KGKMC L INDL+  AGRMGGTT  Q T N
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTT--QYTVN 244          

HSP 2 Score: 40.0466 bits (92), Expect = 1.456e-90
Identity = 23/36 (63.89%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  825 MVNATLMNIADNPTCVQLPVCTTXRETP-CSIIVTG 929
            MVNATLMNIADNPT VQLP     ++     IIVTG
Sbjct:  247 MVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTG 282          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 329.717 bits (844), Expect = 1.480e-89
Identity = 178/266 (66.92%), Postives = 201/266 (75.56%), Query Frame = 2
Query:  146 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRMGGTT----HSQLTTNG*RHTHEHC**PNLCPTPCMYNKXGDP 907
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLI QRYREA+D+I KGKM CL INDLDA AGRMGGTT    ++Q+      +  ++   P     P MYNK  +P
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN---PTNVQLPGMYNKEDNP 272          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 7.347e-89
Identity = 176/258 (68.22%), Postives = 195/258 (75.58%), Query Frame = 2
Query:  146 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRMGGTTHSQLTTNG*RHTHEH-C**PNLCPTPCMYNKXGDP 907
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLI QRYREAADII KGKMCCL INDLDA AGRMGGTT   +       T  +    P     P MYNK  +P
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENP 263          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 1.061e-87
Identity = 173/258 (67.05%), Postives = 194/258 (75.19%), Query Frame = 2
Query:  146 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRMGGTTHSQLTTNG*RHTHEH-C**PNLCPTPCMYNKXGDP 907
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI QRYREAAD+I KGKMCCL INDLDA AGRMGGTT   +       T  +    P     P MYNK  +P
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENP 266          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 2.949e-67
Identity = 125/210 (59.52%), Postives = 149/210 (70.95%), Query Frame = 2
Query:  206 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRMGGTTHSQLTTN 826
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLI  RYREA+DII KG+MC L INDLDA AGRMG TT  Q T N
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTT--QYTVN 219          

HSP 2 Score: 40.817 bits (94), Expect = 2.949e-67
Identity = 23/36 (63.89%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  825 MVNATLMNIADNPTCVQLPVCTTXRETP-CSIIVTG 929
            MVNATLMNIADNPT VQLP      E P   I+ TG
Sbjct:  222 MVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTG 257          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.163e-40
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 2
Query:  476 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADII-XKGKMCCLMINDLDAXAGRMGGTTHSQLTT 823
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LI  RYRE A++I  +GKMC LMINDLDA AGR    T   + T
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNT 120          

HSP 2 Score: 40.0466 bits (92), Expect = 1.163e-40
Identity = 25/38 (65.79%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  825 MVNATLMNIADNPTCVQLP---VCTTXRETPCSIIVTG 929
            +VNATLMNIADNPT VQLP     T  R  P  IIVTG
Sbjct:  122 LVNATLMNIADNPTDVQLPGSYDSTPLRRVP--IIVTG 157          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.691e-40
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 2
Query:  476 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADII-XKGKMCCLMINDLDAXAGRMGGTTHSQLTT 823
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LI  RYRE A++I  +GKMC LMINDLDA AGR    T   + T
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNT 120          

HSP 2 Score: 38.1206 bits (87), Expect = 5.691e-40
Identity = 24/38 (63.16%), Postives = 25/38 (65.79%), Query Frame = 3
Query:  825 MVNATLMNIADNPTCVQLP---VCTTXRETPCSIIVTG 929
            +VNATLMNIADNPT VQLP        R  P  IIVTG
Sbjct:  122 LVNATLMNIADNPTDVQLPGSYDSNPIRRVP--IIVTG 157          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.321e-32
Identity = 88/165 (53.33%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  299 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRM 793
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDA AGR+
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRV 96          
BLAST of EY664829 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.114e-11
Identity = 38/61 (62.30%), Postives = 40/61 (65.57%), Query Frame = 2
Query:  623 KMGINPIMMSAGELESGNAGEPAKLIXQRYREAADIIXKGKMCCLMINDLDAXAGRMGGTT 805
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDA AGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY664829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_ORYSJ1.430e-9269.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.456e-9067.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.480e-8966.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU7.347e-8968.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.061e-8767.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.949e-6759.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.163e-4062.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP5.691e-4062.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY6.321e-3253.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX2.114e-1162.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664829 ID=EY664829; Name=EY664829; organism=Citrus sinensis; type=EST; length=948bp
GGTCCGNATTCCCAGCCCGACCCACGCGTCCGCTTCGCTTTTCTTTGCCT
GCATTACAGCGTGACCCCTTAGCTACTTCAATCACAGCCGTCCAATTCTC
GCTAGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGC
TGCAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGG
TAAGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATT
ACTGCTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGG
CCTTGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAG
GTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTAT
GCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAA
CTTGGACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACA
AGCTTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAG
GTTCCTCTCATCTTGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATT
CCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCAATTATGATGA
GTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACCCGCTAAGTTGATC
ANGCAGAGGTACCGTGAGGCAGCTGACATTATCANGAAAGGAAAAATGTG
CTGCCTCATGATCAATGATCTTGATGCANGAGCTGGTCGTATGGGTGGCA
CCACCCATTCACAGTTAACAACCAATGGTTAACGCCACACTCATGAACAT
TGCTGATAACCCAACCTGTGTCCAACTCCCTGTATGTACAACAAGNAGGG
AGACCCCGTGTTCCATCATAGTCACCGGTATGACTCTTCACATGGTGC
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