EH117794

Overview
NameEH117794
Unique NameEH117794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = -2
Query:   22 PTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 255
            PTA+ F  C NL++  L  ++S   HI  + C  V IS+L + AP  SPNTDGI + AS  V +++ I+ TGDDCI+I
Sbjct:  138 PTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAI 215          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = -2
Query:   22 RHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 264
            R+ PTAI     K++ V+ L ++NS + H+ F  C  V I  L++ AP +SPNTDGI I AS+   ++  ++GTGDDCI+I
Sbjct:  180 RNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAI 260          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = -2
Query:   22 CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 267
            C   PT++ F   KN+++  +  VN++  H+       V I N+++ APAESPNTDGIH+S +  V + +S + TGDDC+S+
Sbjct:  165 CNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSV 246          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.273e-14
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = -2
Query:   22 CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 267
            C     ++ F    N+K+  L  +NSQ+ HI   N   V I  ++V A   SPNTDGIH+ +S  V + NS +GTGDDCISI
Sbjct:  149 CPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISI 230          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.121e-13
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = -2
Query:   22 CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 267
            C+  P ++      N +V  + ++NS+  H+    C  ++I ++ V AP +SPNTDGIH+  S GV + N+++G GDDCISI
Sbjct:  157 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISI 238          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.770e-13
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = -2
Query:   22 CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 267
            C+  P ++      N +V  + ++NS+  H+    C  ++I ++ V AP +SPNTDGIH+  S G+ + N+++G GDDCISI
Sbjct:  157 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISI 238          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.618e-13
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = -2
Query:   22 PTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 255
            PTAI     K++ V+ L + NS + H+ F  C  V I  +++ AP +SPNTDGI I AS+  E++   +GTGDDC+++
Sbjct:  184 PTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAV 261          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.618e-13
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = -2
Query:   22 TNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 276
            T  C   P  I F    N K+ S+   NS+  H+   NC  + +S++ + AP ES NTDGIHI  S GV +  + + TGDDC+SI
Sbjct:  182 TGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSI 266          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.725e-13
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = -2
Query:   22 CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 267
            C+  P ++      N +V  + ++NS+  H+    C  ++I ++ V AP +SPNTDGIH+  S G+ + N+++G GDDCISI
Sbjct:  157 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISI 238          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.172e-13
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = -2
Query:   22 NP-CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 273
            NP C+HA   + F   K+  V+ +  +NS+  HI    C  +   ++ V AP  S NTDGIH+  S+GV + N+ + TGDDCISI
Sbjct:  121 NPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATGDDCISI 205          
The following BLAST results are available for this feature:
BLAST of EH117794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGLR3_ARATH1.125e-1446.15Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_CHAOB1.919e-1444.44Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR1_ARATH1.919e-1440.24Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR6_ARATH3.273e-1443.90Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
PGLR3_MAIZE2.121e-1339.02Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR2_MAIZE2.770e-1337.80Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR2_JUNAS3.618e-1342.31Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR2_ARATH3.618e-1341.18Exopolygalacturonase clone GBGA483 OS=Arabidopsis ... [more]
PGLR1_MAIZE4.725e-1337.80Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR2_PLAAC6.172e-1341.18Exopolygalacturonase (Fragment) OS=Platanus acerif... [more]

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Properties
Property NameValue
Genbank descriptionfjfw23 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117794 ID=EH117794; Name=EH117794; organism=Citrus sinensis; type=EST; length=298bp
GACTGCGTACCAATTCACAACTATAGATATGCAGTCATCTCCTGTTCCAA
CTATGCTATTCTTGACTTCAACACCACGAGATGCACTGATGTGTATCCCA
TCCGTATTAGGACTTTCAGCAGGTGCAATCACTTCGAGATTGGATATCAC
AACCCGTAGACAATTAGTGAATGCAATGTGCATTTGTTGACTGTTGACTA
CCCTAAGGCTCTGAACTTTCAAATTCTTGCACTTATGAAAAGTAATAGCC
GTTGGAGCATGTCGACATGGATTTGTTATGTTACTCAGGACTCATCGT
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