EH117794

Overview
NameEH117794
Unique NameEH117794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.060e-13
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = -2
Query:   22 TNPCRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 276
            T  C+  P ++ F    N +++ +  ++++  H    +   +   N+++IAPAESPNTDGIH+    GV++ N+ + TGDDCIS+
Sbjct:  131 TFECKKLPISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISV 215          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.063e-12
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = -2
Query:   22 CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 267
            C   P  ++F+   N  ++ +  ++S+  H+    C  +      V APA SPNTDGIH+S S  V + +S   TGDDCIS+
Sbjct:  137 CNKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISV 218          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.912e-12
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = -2
Query:   22 CRHAPTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 267
            C    T + F    N+ V  L  +NSQ  HI   +   V +  + V     SPNTDGIH+  S GV + NS + TGDDC+SI
Sbjct:  143 CPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSI 224          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.777e-11
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = -2
Query:   22 PTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 255
            P  I F    N  +Q +   +S+  HI    C  + +  L++ AP ESPNTDGIH+  S GV +  S + TGDDCISI
Sbjct:  149 PVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISI 226          
BLAST of EH117794 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.777e-11
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = -2
Query:   22 PTAITFHKCKNLKVQSLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI 255
            P  I F    N  +Q +   +S+  HI    C  + +  L++ AP ESPNTDGIH+  S GV +  S + TGDDCISI
Sbjct:  149 PVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISI 226          
The following BLAST results are available for this feature:
BLAST of EH117794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGLR_BRANA8.060e-1335.29Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR_TOBAC3.063e-1236.59Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]
PGLR_PRUPE8.912e-1240.24Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR_GOSHI5.777e-1142.31Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2... [more]
PGLR_GOSBA5.777e-1142.31Polygalacturonase OS=Gossypium barbadense GN=G9 PE... [more]

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Properties
Property NameValue
Genbank descriptionfjfw23 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117794 ID=EH117794; Name=EH117794; organism=Citrus sinensis; type=EST; length=298bp
GACTGCGTACCAATTCACAACTATAGATATGCAGTCATCTCCTGTTCCAA
CTATGCTATTCTTGACTTCAACACCACGAGATGCACTGATGTGTATCCCA
TCCGTATTAGGACTTTCAGCAGGTGCAATCACTTCGAGATTGGATATCAC
AACCCGTAGACAATTAGTGAATGCAATGTGCATTTGTTGACTGTTGACTA
CCCTAAGGCTCTGAACTTTCAAATTCTTGCACTTATGAAAAGTAATAGCC
GTTGGAGCATGTCGACATGGATTTGTTATGTTACTCAGGACTCATCGT
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