EH117793

Overview
NameEH117793
Unique NameEH117793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length155
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.251e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            ++ +F K++VNGK A P+YKFLKS KGGFLGD+IKWNFTKFLV ++
Sbjct:  108 EYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDRE 153          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.134e-13
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = -1
Query:   18 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLV 146
            +F IFDK+DVNG + APIYKFLKS  GGFLGD IKWNF KFLV
Sbjct:  162 EFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLV 204          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.640e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = -1
Query:    3 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQDSS 146
            +F IFDKI+VNGKN  P+Y FLK +KGG  GDAIKWNF KFLV +  +
Sbjct:  134 EFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDRQGN 181          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.059e-12
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = -1
Query:    9 YQFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 149
            ++ T+F KIDVNG   +P++KFLK+EKGGF+ DAIKWNFTKFLV +D
Sbjct:   89 FEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGRD 135          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.081e-12
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            ++ +F K+ VNG+NAAP+YKFLKS+K  FLG  IKWNFTKFLV +D
Sbjct:  100 EYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKD 145          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.256e-12
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            +F IFDK+DVNG   AP+Y+FLKS  GGF GD +KWNF KFLV ++
Sbjct:  165 EFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKN 210          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.256e-12
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = -1
Query:   18 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLV 146
            +F IFDK+DVNG + APIY+FLKS  GGFLG  IKWNF KFL+
Sbjct:  165 EFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLI 207          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            ++ +F K+ VNG+NAAPIYKFLK+ K  FLG  IKWNFTKFLV +D
Sbjct:   98 EYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGKD 143          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.912e-11
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            +F IF+KI+VNG+NA+P+YKFLK  K G  GD I+WNF KFLV ++
Sbjct:   95 EFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDKN 140          
The following BLAST results are available for this feature:
BLAST of EH117793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GPX4_HELAN1.251e-1367.39Probable phospholipid hydroperoxide glutathione pe... [more]
GPX7_ARATH2.134e-1376.74Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX3_ARATH3.640e-1364.58Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX1_CAEEL1.059e-1265.96Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]
GPX5_ARATH3.081e-1265.22Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX1_PEA5.256e-1263.04Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_ARATH5.256e-1269.77Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX4_ARATH1.171e-1165.22Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX8_ARATH9.912e-1160.87Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionfjfw21 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117793 ID=EH117793; Name=EH117793; organism=Citrus sinensis; type=EST; length=155bp
GACGATGAGTCCTGAGTAACCAGAAACTTGGTAAAATTCCACTTGATTGC
ATCTCCAAGGAATCCTCCTTTCTCTGATTTTAGAAACTTGTAAATAGGTG
CCGCATTCTTTCCATTCACATCAATCTTATCAAAGATTGTGAATTGGTAC
GCAGT
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