EG358379

Overview
NameEG358379
Unique NameEG358379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length234
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5185 contig Csv1_Contig5185:99..332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_DANRE (Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_CHICK (Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_BOVIN (Casein kinase II subunit beta OS=Bos taurus GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2C_NEUCR (Casein kinase II subunit beta-2 OS=Neurospora crassa GN=ckb-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.817e-20
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQKA 233
            K  DFG+CPRV C   P LP+G SD+P S  VK+YC RCEDIY P+ S++  IDGAYFGT+F ++F   Y  L P K+
Sbjct:  106 KKADFGKCPRVMCSSHPLLPMGLSDVPNSKPVKLYCARCEDIYNPKSSRHAAIDGAYFGTSFHNIFFQVYPTLVPAKS 183          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_SPOFR (Casein kinase II subunit beta OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.904e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SD+P  + VK+YCPRC D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGHCPRVYCECQPMLPLGLSDVPGEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2C_YEAST (Casein kinase II subunit beta' OS=Saccharomyces cerevisiae GN=CKB2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQ 227
            K  DFGRCPRVYC  Q  LPVG  DIP    VK+YCP CED+Y P+ S++  IDGAYFGT+FP +FL  +  + P+
Sbjct:  132 KEADFGRCPRVYCNLQQLLPVGLHDIPGIDCVKLYCPSCEDLYIPKSSRHSSIDGAYFGTSFPGMFLQAFPDMVPK 207          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_DROME (Casein kinase II subunit beta OS=Drosophila melanogaster GN=CkIIbeta PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.519e-19
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
The following BLAST results are available for this feature:
BLAST of EG358379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CSK2B_PIG5.220e-2054.05Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE5.220e-2054.05Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN5.220e-2054.05Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]
CSK2B_DANRE5.220e-2054.05Casein kinase II subunit beta OS=Danio rerio GN=cs... [more]
CSK2B_CHICK5.220e-2054.05Casein kinase II subunit beta OS=Gallus gallus GN=... [more]
CSK2B_BOVIN5.220e-2054.05Casein kinase II subunit beta OS=Bos taurus GN=CSN... [more]
CSK2C_NEUCR6.817e-2055.13Casein kinase II subunit beta-2 OS=Neurospora cras... [more]
CSK2B_SPOFR8.904e-2054.05Casein kinase II subunit beta OS=Spodoptera frugip... [more]
CSK2C_YEAST1.163e-1956.58Casein kinase II subunit beta' OS=Saccharomyces ce... [more]
CSK2B_DROME1.519e-1954.05Casein kinase II subunit beta OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank description12c5 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0012c5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358379 ID=EG358379; Name=EG358379; organism=Citrus sinensis; type=EST; length=234bp
ACAAGAACTATGACTTTGGGAGATGTCCCAGGGTCTACTGCTGTGGACAA
CCCTGCCTTCCGGTTGGTCAATCGGACATTCCTCGTTCAAGCACTGTGAA
AATATACTGCCCCAGATGTGAAGATATTTACTACCCTAGGTCCAAGTATC
AAGACATTGATGGAGCCTATTTTGGAACGACGTTTCCTCACCTCTTCCTG
ATGACTTACGGGCACCTCAAGCCACAAAAGGCAG
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