EG358373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 7.957e-45 Identity = 89/116 (76.72%), Postives = 95/116 (81.90%), Query Frame = 3 Query: 39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 QAP + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQVT LV+CHTRELA+QI E+ERF Sbjct: 20 QAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERF 135
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 1.039e-44 Identity = 90/121 (74.38%), Postives = 98/121 (80.99%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V T A G+ + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 1.773e-44 Identity = 88/116 (75.86%), Postives = 95/116 (81.90%), Query Frame = 3 Query: 39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 QAP + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 20 QAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERF 135
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 3.949e-44 Identity = 89/121 (73.55%), Postives = 97/121 (80.17%), Query Frame = 3 Query: 48 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 D V A G+ + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 16 DEVENAAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 5.157e-44 Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 3 Query: 39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 Q P + K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 20 QVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERF 135
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3) HSP 1 Score: 175.637 bits (444), Expect = 6.736e-44 Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 3 Query: 84 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 6.736e-44 Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 3 Query: 84 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 K YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP GQV+ LV+CHTRELA+QI E+ERF Sbjct: 36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 136
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3) HSP 1 Score: 172.94 bits (437), Expect = 4.366e-43 Identity = 85/118 (72.03%), Postives = 101/118 (85.59%), Query Frame = 3 Query: 36 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 + AP++ A A+ +A KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P PG++T LV+CHTRELAYQI +E+ RF Sbjct: 22 SNAPEAGADGADKDADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARF 139
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.167e-42 Identity = 87/118 (73.73%), Postives = 98/118 (83.05%), Query Frame = 3 Query: 45 PDSVATKANGEAA---KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 P + A + NG+ A KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ ECIPQAILG DV+CQAKSGMGKTAVFVL+ LQQ EP G+V+ ++LCHTRELAYQI +EF RF Sbjct: 33 PPAPAAETNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRF 150
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3) HSP 1 Score: 169.859 bits (429), Expect = 3.696e-42 Identity = 87/111 (78.38%), Postives = 96/111 (86.49%), Query Frame = 3 Query: 60 TKANGEAA-KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386 T NGE + KKG YVGIHS+GFRDFLLKPELLRAI DSGFEHPSEVQ CIPQ+ILG DV+CQAKSGMGKTAVFVLSTLQQ EP G+V+ LVLCHTRELA+QI +E+ RF Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARF 142 The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 237
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Sequences
The
following sequences are available for this feature:
EST sequence >EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bpback to top |