EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 45/83 (54.22%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 45/83 (54.22%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            + DF+   +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+  L +  P   ++  L+L  TRELA Q
Sbjct:   47 WEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQ 128          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F +  LK ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F ++ LQ+ +P+   V AL+L  TRELA QI
Sbjct:   40 FDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQI 122          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 43/86 (50.00%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            SS F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + AL+L  TRELA QI
Sbjct:   22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.264e-14
Identity = 43/86 (50.00%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            SS F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + AL+L  TRELA QI
Sbjct:   22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            + F D  LK ELLR I   GFE+PS +Q   I   I G DV+ QA+SG GKTA F +S LQ  +    +  AL++  TRELA+QI
Sbjct:   22 TSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQI 106          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LKPELLR I   GFE PS +Q   I   +   DV+ QA+SG GKTA F +S LQ+ + +  Q  AL+L  TRELA QI
Sbjct:   21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQI 103          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.487e-14
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 3
Query:   96 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            V +H++ F    LKP+LL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  LQ  + N     AL+L  TRELA QI
Sbjct:   22 VKVHAT-FESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQI 110          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK ELLR I   GFE PS +Q   I     G DVI QA+SG GKTA F +S LQ+ +     V ALV+  TRELA QI
Sbjct:   31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQI 113          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
IF4A2_HUMAN4.258e-1454.22Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_BOVIN4.258e-1454.22Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
DHH1_NEUCR4.258e-1443.90ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
IF4A_USTMA7.264e-1450.60ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
FAL1_YEAST7.264e-1450.00ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS77.264e-1450.00ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
IF4A_YARLI9.487e-1448.24ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_SCHPO9.487e-1450.60ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
FAL1_PICST9.487e-1447.78ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
IF4A_CAEEL1.239e-1351.81Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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