EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:155..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.518e-40
Identity = 80/114 (70.18%), Postives = 97/114 (85.09%), Query Frame = 3 
Query:   48 DSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            ++ AT+ NGEA KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +V+C+ RELAYQI +E+ RF
Sbjct:   33 ENEATQENGEADKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRF 146
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.007e-39
Identity = 81/114 (71.05%), Postives = 91/114 (79.82%), Query Frame = 3 
Query:   48 DSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            D   T   G A KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   37 DGELTVTGGRADKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARF 150
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.242e-39
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 3 
Query:   51 SVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            ++    N  AAKKG YVGIHS+GFR+FLLKPELLRAI   GFEHPSEVQ  CIPQAILG DV+CQAKSG+GKTAVFVL+TLQQ E   G+ + LV+CHTRELAYQI +E++RF
Sbjct:   38 NLTVSGNAAAAKKGSYVGIHSTGFREFLLKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRNEYQRF 150
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.995e-39
Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 3 
Query:   36 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARF 149
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.995e-39
Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 3 
Query:   36 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARF 149
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.995e-39
Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 3 
Query:   36 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARF 149
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.524e-39
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 3 
Query:   60 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   39 TVSGGRPDKKGSYVGIHSTGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARF 148
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.524e-39
Identity = 77/108 (71.30%), Postives = 93/108 (86.11%), Query Frame = 3 
Query:   66 ANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            +NG+A KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +V+C+ RELAYQI +E+ RF
Sbjct:   41 SNGDAEKKGSYVGIHSTGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRF 148
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.113e-38
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 3 
Query:   60 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            T +   A KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RF
Sbjct:   41 TVSGARADKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARF 150
[Close]
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 76/111 (68.47%), Postives = 92/111 (82.88%), Query Frame = 3 
Query:   57 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 386
            A  A  ++ KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +V+C+ RELAYQI +E+ RF
Sbjct:   39 AEGATTDSEKKGSYVGIHSTGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRF 149
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
SUB2_CANGA4.518e-4070.18ATP-dependent RNA helicase SUB2 OS=Candida glabrat... [more]
SUB2_EMENI1.007e-3971.05ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
SUB2_SCLS12.242e-3970.80ATP-dependent RNA helicase sub2 OS=Sclerotinia scl... [more]
SUB2_NEOFI4.995e-3968.64ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_ASPFU4.995e-3968.64ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
SUB2_ASPCL4.995e-3968.64ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_ASPNC6.524e-3971.82ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB21_VANPO6.524e-3971.30ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozy... [more]
SUB2_AJECN1.113e-3871.82ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]
SUB22_VANPO2.099e-3768.47ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]

Pages

back to top
Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
back to top