EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:155..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.414e-17
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  111 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            + F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +P   ++ AL++  TRELA Q
Sbjct:   31 NSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQ 114          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.847e-17
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            F DF LK ELL  I ++GFE PS +Q E IP A+ G DV+ +AK+G GKTA F++ +LQQ +P   ++ AL+L  TRELA Q
Sbjct:   32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQ 113          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.847e-17
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            F DF LK ELL  I ++GFE PS VQ E IP A+ G D++ +AK+G GKTA FV+  LQQ  P   ++ AL+L  TRELA Q
Sbjct:   32 FEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQ 113          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.412e-17
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   45 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            P    T+     A KG        F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++T P   +  AL+L  TRELA Q
Sbjct:   31 PKDTRTQTEDVTATKGLE------FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKISKTQALILVPTRELALQ 130          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.115e-17
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 371
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q  H
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSH 133          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.115e-17
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 371
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q  H
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSH 133          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.115e-17
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 371
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q  H
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSH 133          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY---QICHEFERF 386
            Q  D  ATK N               F D+ LK +LLR I + GFE PS +Q E IP A+ G D++ +AK+G GKT  F + TL++ +P    + A++L  TRELA    Q+C E  ++
Sbjct:  144 QTEDVTATKGNE--------------FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 362
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q
Sbjct:   51 FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQ 132          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 3
Query:   39 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY---QICHEFERF 386
            Q  D  ATK N               F D+ LK +LL+ I + GFE PS +Q E IP A+ G D++ +AK+G GKT  F +  L++ +PN   + A++L  TRELA    Q+C E  ++
Sbjct:  114 QTADVTATKGNE--------------FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
DHH1_CANGA1.414e-1750.00ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DHH1_PICST1.847e-1752.44ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_DEBHA1.847e-1753.66ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_COCIM2.412e-1743.40ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]
DHH1_ASPTN4.115e-1748.24ATP-dependent RNA helicase dhh1 OS=Aspergillus ter... [more]
DHH1_ASPOR4.115e-1748.24ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]
DHH1_ASPNC4.115e-1748.24ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
RH6_ARATH1.197e-1638.66DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
DHH1_PHANO1.197e-1648.78ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
RH12_ARATH1.564e-1637.82DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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