EG358373

Overview
NameEG358373
Unique NameEG358373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:155..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.911e-14
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY---QICHE 374
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ +     +  ++L  TRELA    Q+C E
Sbjct:  136 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKE 224          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.496e-14
Identity = 45/83 (54.22%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +  +  ALVL  TRELA QI
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY---QICHEFER 383
            F +F LK ELL  I + G+E PS +Q   IP A+ G DV+ +AK+G GKT  + +  L+Q +P    + ALV+  TRELA    QIC E  +
Sbjct:   60 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELAK 151          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY---QICHEFERF 386
            F D  LK +LLR I + G+  PS +Q + IP A+ G D++ +AK+G GKTA F++  L++T+P    +  L+L  TRELA    Q+C E  ++
Sbjct:   51 FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKY 143          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 42/78 (53.85%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  132 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            LK ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +STLQ+ + N     AL+L  TRELA QI
Sbjct:   30 LKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  108 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            +  F    LK ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL++  TRELA QI
Sbjct:   22 TDSFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQI 107          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 45/83 (54.22%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 45/83 (54.22%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 45/83 (54.22%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 117          
BLAST of EG358373 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 45/83 (54.22%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  117 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 365
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E    +  ALVL  TRELA QI
Sbjct:   36 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI 118          
The following BLAST results are available for this feature:
BLAST of EG358373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
RH8_ORYSJ1.911e-1442.70DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
IF4A2_CHICK2.496e-1454.22Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
DDX6_DROME3.261e-1443.48Putative ATP-dependent RNA helicase me31b OS=Droso... [more]
DDX6_DICDI3.261e-1440.86Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
IF4A_PHANO4.258e-1453.85ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_ASPTN4.258e-1448.84ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A2_RAT4.258e-1454.22Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB4.258e-1454.22Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE4.258e-1454.22Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_MACFA4.258e-1454.22Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank description3d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358373 ID=EG358373; Name=EG358373; organism=Citrus sinensis; type=EST; length=388bp
ACGAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGAT
TCCGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGG
TATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTC
GTGCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAA
TGCATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATC
AGGGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAACAAACAG
AGCCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAG
TTAGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAG
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