EG358372

Overview
NameEG358372
Unique NameEG358372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2888 contig Csv1_Contig2888:710..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358372 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 34/53 (64.15%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  229 VRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINY 387
            VRARRGQATD HS+AER+RRE+I+ER++ LQ+LVP  +K T +A M+DEI++Y
Sbjct:  146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDRAAMIDEIVDY 197          
BLAST of EG358372 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   55 TNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINY 387
            T  SSS  S    +P        +K NV+D K++E+E +   ++E +  +           +R +A + H+L+ER RR++I+ERMK LQ+L+P C+K + KA MLDE I Y
Sbjct:  228 TGTSSSVVSKSEIEP--------EKTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK-SDKASMLDEAIEY 329          
BLAST of EG358372 vs. ExPASy Swiss-Prot
Match: BH007_ARATH (Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.845e-12
Identity = 34/53 (64.15%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  229 VRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINY 387
            VRARRGQATD HS+AER+RRE+I+ER++ LQ+LVP  +K T +A M+DEI++Y
Sbjct:  144 VRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNK-TDRAAMIDEIVDY 195          
The following BLAST results are available for this feature:
BLAST of EG358372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
UNE12_ARATH6.772e-1264.15Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
PIF1_ARATH6.772e-1236.94Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]
BH007_ARATH8.845e-1264.15Transcription factor bHLH7 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank description6e9 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0006e9, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358372 ID=EG358372; Name=EG358372; organism=Citrus sinensis; type=EST; length=388bp
ACTGTGACGACTACCGCTACTACTACTCGTATGGACAAGAAAAGGAAGAA
CAGAACTAATGCTTCCTCTTCTTTCAATTCTGCTCAGTCAAAGGATCCAA
GAGAAGTGAAAAGCAAGAAGCAAAAGAAAGGCAATGTTAATGATGCCAAG
AAAGAAGAAAAGGAAAATAGTCCTAAAGCTGATAGTGAGAAGAAAGTTGC
TAAAGAACCTCCAAAAGATTACATTCATGTTAGAGCAAGGAGGGGTCAAG
CAACTGACAGCCACAGCTTAGCAGAAAGGGTAAGAAGAGAGAAAATTAGT
GAGAGGATGAAAATTTTGCAAAAGCTTGTTCCTGGCTGTGACAAGGTAAC
TGGTAAGGCCTTCATGTTGGATGAAATTATCAACTATG
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