EG358370

Overview
NameEG358370
Unique NameEG358370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.721e-23
Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF HF+AVAQRLGV TA DYADILEFLI RW            +RAQ+FVC LAPRIRR++E A +RAK  + P +  SWI+ RE+ L
Sbjct:  301 YDGQDDNLFEHFSAVAQRLGVDTAKDYADILEFLINRWKVGELTGFSGEGKRAQDFVCTLAPRIRRIEERAQERAK--QAPRIPCSWIYGREVQL 393          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.721e-23
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            ++AQ++VC L  RIR+L+E A  RAK  + P + FSWIF+R++ L
Sbjct:  304 YDGRDDNLFHHFSAVAQRLGVYTAKDYADILEFLVGRWKVESLTGLSGEGQKAQDYVCALPARIRKLEERAQGRAK--EGPTIPFSWIFDRQVKL 396          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.115e-22
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRE 297
            YDG D  LF ++++VAQR+GVYTA DYADILEFL+GRW            R+AQE++CGL PRIRRL+E A  R K  +   +KFSWI +RE
Sbjct:  299 YDGRDDNLFDNYSSVAQRIGVYTAKDYADILEFLVGRWKVEQLTGLSGEGRKAQEYICGLPPRIRRLEERAQARVK--ESSTLKFSWIHDRE 388          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.441e-22
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF +++AVAQ++GVYTA DYADILE L+ RW             +AQ+FVCGLAPRIR+L E A   +K +   LV FSWIFN+EL +
Sbjct:  306 YDGKDDNLFENYSAVAQQIGVYTAKDYADILEHLVNRWKVENLMGLSGEGHKAQDFVCGLAPRIRKLGERAQSLSKPVS--LVPFSWIFNKELKV 398          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.037e-20
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF H++AVAQR+GVYTA DY DI+E L+ RW            R+AQ+++C L  RIRRL+E A ++A+    P+  FSWIF+RE+ L
Sbjct:  304 YDGRDYNLFDHYSAVAQRIGVYTAKDYVDIVEHLVDRWKVKELAGLSAEGRKAQDYLCSLPSRIRRLEERAQEKAQG-STPVSPFSWIFDREVKL 397          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_CORSA (Omega-12 acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Coriandrum sativum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.180e-20
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNREL 300
            YDG D  LF HF AVAQ++GVY+A DY DI++FL+ +W            R+AQE+VC LA +IRR++E    + KK   P V FSWIFNR++
Sbjct:  292 YDGSDDMLFKHFTAVAQQIGVYSAWDYCDIIDFLVDKWNVAKMTGLSGEGRKAQEYVCSLAAKIRRVEEKVQGKEKKAVLP-VAFSWIFNRQI 383          
BLAST of EG358370 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.571e-19
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   22 YDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 306
            YDG D  LF ++++VAQR+G  TA DYADILEFL+GRW             +AQ+FVCGL  RIR+L+E A  RAK+     V FSWIF+REL L
Sbjct:  304 YDGEDDNLFDNYSSVAQRIGD-TAKDYADILEFLVGRWKVDAFTGLSGEGNKAQDFVCGLPARIRKLEERAAGRAKQTSKS-VPFSWIFSRELVL 396          
The following BLAST results are available for this feature:
BLAST of EG358370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_ELAGV1.721e-2357.89Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA1.721e-2355.79Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOYBN1.115e-2255.43Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SIMCH9.441e-2253.68Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI3.037e-2049.47Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CORSA5.180e-2049.46Omega-12 acyl-[acyl-carrier-protein] desaturase, c... [more]
STAD_LINUS2.571e-1953.68Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank description1b5 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0001b5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358370 ID=EG358370; Name=EG358370; organism=Citrus sinensis; type=EST; length=411bp
TCGAGCGGCCGCCCGGGCAGGTACGATGGGCATGACCCACGGCTGTTTGC
GCATTTTGCGGCAGTGGCTCAGCGGCTTGGCGTGTATACGGCACATGACT
ATGCGGATATTTTAGAGTTTTTGATTGGACGGTGGGGATTGGAAAAGCTG
GAAGGCTTGACGGGTGAAGGGAGACGTGCACAAGAGTTTGTGTGCGGCTT
AGCGCCTAGGATTAGGCGACTGCAGGAGTTAGCCGATCAGCGAGCCAAGA
AGCTGAAGCCGCCTCTCGTTAAGTTTAGCTGGATTTTTAATAGGGAACTC
AGCCTGTAAAAATTAAAAATTAAAAACCCCAAAAAAAAATTTTTTTTTTC
TTTTACAATGTATTTCCCTAATGTTATGCATACATCGTGGTACCTCGGCC
GCGACCACGCT
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