EY720587

Overview
NameEY720587
Unique NameEY720587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.354e-85
Identity = 150/230 (65.22%), Postives = 184/230 (80.00%), Query Frame = 2
Query:   29 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDI 718
            GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LCQKRAL+A+ LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N  TGYIDYD+LE++A LF PKLI+AG S Y+R  DY R+RK+ ++  A ++ADMAHISGLV AGV+PSPFE+ HV  TTTHK+L G R  MI +R GV  +
Sbjct:   47 GLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSV 276          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 315.464 bits (807), Expect = 2.310e-85
Identity = 153/228 (67.11%), Postives = 184/228 (80.70%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGV 709
            +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N  VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG IDY+QL  +A LFRP+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VIPSPF++A +  TTTHK+L G R  +I +R GV
Sbjct:   69 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGV 296          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.941e-85
Identity = 152/228 (66.67%), Postives = 183/228 (80.26%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGV 709
            +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG IDYDQL  +A LF+P+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VIPSPF++A +  TTTHK+L G R  +I +R GV
Sbjct:   69 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGV 296          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.941e-85
Identity = 150/236 (63.56%), Postives = 187/236 (79.24%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPG 730
            + + LIPSENFTSV+VM  +GS M NKYSEGYPG RYYGGN+YIDMAESLCQKRALE + LDP KWGVNVQSLSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ     KIS +S +F+TM YR++ +TG +DYD L +++ LFRPK+IVAG SAYAR+ DY+R R++ +   A +L+DMAH+SGLVAAGV PSPFEY+ +  TTTHKSL GPRG MI +R G+  +T  G
Sbjct:   60 RSITLIPSENFTSVAVMNLLGSEMQNKYSEGYPGQRYYGGNQYIDMAESLCQKRALELYGLDPAKWGVNVQSLSGAPANLYAYSAIMEVGDRMMGLDLPHGGHLSHGYQLQNGNKISYISKYFQTMAYRVDPATGLVDYDTLSETSKLFRPKVIVAGTSAYARVLDYKRFREIADACGAYLLSDMAHVSGLVAAGVHPSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGIRKVTKKG 295          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 313.538 bits (802), Expect = 8.779e-85
Identity = 148/230 (64.35%), Postives = 182/230 (79.13%), Query Frame = 2
Query:   29 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDI 718
            GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LCQKRAL+ + LD + WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF P+LI+AG S Y+R  DY R+RK+ +   A ++ADMAH+SGLVAAGV+PSPFE+ HV  TTTHK+L G R  MI +R GV  +
Sbjct:   47 GLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSV 276          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.956e-84
Identity = 151/231 (65.37%), Postives = 183/231 (79.22%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDI 718
            +GLELI SENF   + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K++SA SIFFE+MPY+LN  TG IDY+QL  +A LFRP+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VIPSPF++A V  TTTHK+L G R  +I +R GV  +
Sbjct:   69 RGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTV 299          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.707e-84
Identity = 153/256 (59.77%), Postives = 194/256 (75.78%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGRGCL*L*RERKSAGLREGQVGG 796
            + LIPSENFTS SVM  +GS M NKYSEGYPG RYYGGN++IDMAESLCQKRALE + LDP+ WGVNVQ LSG+P+N   Y+A+++ +DR+M LDLPHGGHLSHGYQ  +  KIS +S +F+TMPY ++  TG IDYD L K++ LFRPK+IVAGASAY+R+ DY+R +++ +   A +++DMAHISGLVAAGV  SPFEY+ +  TTTHKSL GPRG MI +R GV  +T  G+  L    +R +  +  G  GG
Sbjct:   63 ITLIPSENFTSKSVMDLLGSEMQNKYSEGYPGERYYGGNQFIDMAESLCQKRALELYNLDPQLWGVNVQPLSGAPANLYAYSAVMETNDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFQTMPYHVDSQTGIIDYDFLSKTSKLFRPKVIVAGASAYSRVLDYKRFKEIADACGAYLMSDMAHISGLVAAGVTRSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGKEVLYDLDKRINFSVFPGHQGG 318          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.688e-83
Identity = 150/227 (66.08%), Postives = 184/227 (81.06%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTG 706
            KGLELI SENFTS +VM+A+GS  TNKY+EGYPG+RYYGG E +D  E+LCQKRAL+AFRLD  KWGVNVQ  SGSP+NF VYTALL+PHDRIM LDLP GGHL+HGYQTD KKISA SIFFE+MPY++  + G IDY +LE++A LF+PKLI++GASAY R +DY+R+R + +K  A ++ DMAH SGLVAA ++ SPF+Y  V  +TTHK+L GPR  +I FR G
Sbjct:   30 KGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIG-ADGLIDYQRLEENALLFKPKLIISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFRRG 255          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.402e-82
Identity = 148/224 (66.07%), Postives = 179/224 (79.91%), Query Frame = 2
Query:   29 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFR 700
            GLELI SENFTS +VM+++GS  TNKY+EG PGARYYGGNE +D  E+LC KRALE F L+PE+WGVNVQ  SGS +NF  +T LLKPHDRIM LDLP GGHL+HGYQTD KKISA SIFFE+MPY++NE TGY+DY+++E +A LFRPKL++AGASAY R +DYER+RK+ +K  A +L DMAHISG+VA     SPF +  V  TTTHK+L GPR  +I FR
Sbjct:   55 GLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTDKKKISATSIFFESMPYQVNE-TGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFR 277          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.894e-79
Identity = 144/228 (63.16%), Postives = 176/228 (77.19%), Query Frame = 2
Query:   38 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDI 718
            LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGN++ID AESLCQ RAL+ + LDPEKWGVNVQ+LSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ  +  KIS +S +F TMPY +N  TG IDYD L  ++ LFRPK+IVAG SAY+R  DY R RK+ +   A +L+DMAHISGLVAA VI SPFE++ +  TTTHKSL GPRG MI +R G+  +
Sbjct:   51 LIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYDTLAMTSKLFRPKVIVAGTSAYSRKLDYARFRKIADGCGAYLLSDMAHISGLVAANVIDSPFEHSDIVTTTTHKSLRGPRGAMIFYRKGIKKV 278          
The following BLAST results are available for this feature:
BLAST of EY720587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_RABIT1.354e-8565.22Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYM_HUMAN2.310e-8567.11Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN3.941e-8566.67Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ASHGO3.941e-8563.56Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_BOVIN8.779e-8564.35Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_RABIT1.956e-8465.37Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_KLULA9.707e-8459.77Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI3.688e-8366.08Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC2_DICDI1.402e-8266.07Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYM_CANGA1.894e-7963.16Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-E09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720587 ID=EY720587; Name=EY720587; organism=Citrus sinensis; type=EST; length=818bp
CACGCGTCCGTTTTGTGTGATTTTGAAGGGACTTGAACTCATTCCTTCAG
AGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACC
AACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGA
GTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCCCTGGAAGCAT
TTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGA
TCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAG
GATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATC
AGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATG
CCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGA
GAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTG
CTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAA
CAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGGTTGGTTGC
TGCTGGTGTCATCCCTTCACCTTTTGAGTATGCACATGTTGGTGACACCA
CAACTCACAAATCACTTCCTGGGCCACGTGGCACCATGATCTCCTTTAGG
ACGGGAGTGACAGACATTACAAACCCGGGAAGGGGGTGTCTCTGATTATG
AAGAGAAAGGAAGTCAGCGGGCTTGCGTGAAGGCCAGGTGGGCGGAATAG
CGGGGGATTAGTGGTTAG
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