EY720587

Overview
NameEY720587
Unique NameEY720587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 1.039e-77
Identity = 140/235 (59.57%), Postives = 177/235 (75.32%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNPGR 733
            + LIPSENFTS +VM  +GS + NKYSEGYPG RYYGGNE ID +ESLCQ RALE + LDP KWGVNVQ LSG+P+N  VY+A++   +R+M LDLP GGHLSHGYQ  +   IS +S +F++MPY ++ +TG IDYD L+  A  FRPK+IVAG SAY+RL DY R +++     A +++DMAHISGLVAA V+PSPFE++ +  TTTHKSL GPRG MI FR G+  +T  G+
Sbjct:   55 ITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYYGGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMGLDLPDGGHLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSAYSRLIDYARFKEISQGCGAYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIKSVTKKGK 289          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 5.717e-68
Identity = 125/229 (54.59%), Postives = 165/229 (72.05%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVT 712
            K + LI SEN+   S M+A GSV+TNKYSEG  G RYYGG  ++D  E LCQKRALE F LDP+ WGVNVQ  SGSP+NF +YTA++ P  RIM LDLP GGHL+HGY+T T+KISA S++F++ PY +  S G IDY+ LEK+ T F P +++ G SAY+R  DY+R++ +  +  A + AD++HIS LVA+G++ SPFE+  +  TTT K L GPRG +I +R  VT
Sbjct:   34 KTINLIASENYAHQSAMEACGSVLTNKYSEGRVGERYYGGTHWVDRIELLCQKRALELFGLDPDVWGVNVQPYSGSPANFAIYTAVVPPGGRIMGLDLPSGGHLTHGYKTKTRKISASSVYFDSRPYTVG-SNGLIDYEGLEKTFTDFLPHILICGYSAYSRDIDYKRLQSIAGRNGAFLFADISHISPLVASGLMNSPFEHCDIVMTTTQKGLRGPRGALIFYRRAVT 261          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.195e-57
Identity = 114/220 (51.82%), Postives = 155/220 (70.45%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            +ELI SEN+ S +VM A+GS++TNKY+EGYPG RYYGG E +D  E L ++RA E F  +     VNVQ  SG+ +N  V  A+LKP D IM ++L HGGHL+HG       ++    +F  +PY +N+  G+IDYD++E+ A   +PK+I+AGASAYAR  D++R R++ +K  A+++ DMAHI+GLVAAG+ PSP  YAHV  TTTHK+L GPRG MI
Sbjct:   29 IELIASENWVSPAVMSAMGSILTNKYAEGYPGRRYYGGCECVDEVEELARERAKELFGAEY----VNVQPHSGAQANMAVQFAILKPGDTIMGMNLDHGGHLTHG-----SPVNFSGSYFHVVPYGVNDE-GFIDYDKVEEIALECKPKMIIAGASAYARTIDFKRFREIADKVDAVLMVDMAHIAGLVAAGLHPSPIPYAHVTTTTTHKTLRGPRGGMI 238          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.038e-57
Identity = 116/239 (48.54%), Postives = 156/239 (65.27%), Query Frame = 2
Query:   26 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI----SFRTGVTDITNPG 730
            +GLELI SENF S +V+QA GSV TNKY+EGYPG RYYGG EY D+ E+L + RA E F  +      NVQ  SGS +N + Y A+L+P D I+ L+L HGGHL+HG+  +    +     ++ +PY + + T  IDYD+LEK A    PK+IV G SAY R++D++R+R++ +K  A+ + DMAH +GLVA G  PSP  +AHV  TTTHK+L GPR  MI     F   +  +T PG
Sbjct:   29 EGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAEH----ANVQPHSGSSANMEAYGAILQPGDTILGLNLAHGGHLTHGHPLNFSGKT-----YKIVPYGVTKETETIDYDELEKLALEHHPKVIVGGGSAYPRIFDFKRMREIADKAGALFMVDMAHFAGLVAGGAHPSPVPHAHVVTTTTHKTLRGPRAGMILSKQEFAAAIDKVTFPG 258          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.662e-57
Identity = 113/220 (51.36%), Postives = 151/220 (68.64%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            +ELI SENF S +VM+A+G+ +TNKY+EGYPG RYYGG EY+DMAE L ++R  + F  +      NVQ  SG+ +N   Y ALLKP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYDQ+E  A   +PKLIVAGASAY R+ D+++ R++ +K  A ++ DMAHI+GLVAAG+ P+P  YA V  TTTHK+L GPRG  I
Sbjct:   28 IELIASENFVSRAVMEAMGTPLTNKYAEGYPGRRYYGGCEYVDMAEELARERLKKLFGAEH----ANVQPHSGAQANMAAYFALLKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKLIVAGASAYPRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAI 238          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.662e-57
Identity = 117/220 (53.18%), Postives = 156/220 (70.91%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            LE+I SENFTS +VM+A+GSV TNKY+EGYPG RYYGG EY D  E L  +RA E F  +     VNVQ  SGS +N  VY ALLKP+D+I+ +DL HGGHL+HG      K++A    +++  Y +N+  G+IDYD++   A + +PKLIV GASAY R+ D+++ R++ ++  A+++AD+AHI+GLVAAG  PSPF Y  V  TTTHK+L GPRG MI
Sbjct:   26 LEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHG-----AKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPRVIDFKKFREIADEVGALLMADIAHIAGLVAAGEHPSPFPYCDVVTTTTHKTLRGPRGGMI 235          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.476e-57
Identity = 120/225 (53.33%), Postives = 147/225 (65.33%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTG 706
            LELI SEN  S +VM A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA E F+ D      NVQ  SGS +N  VY ALL+P D ++ +DL HGGHL+HG       +S     F  + Y + E TG IDYDQL   A   +PKLIVAGASAY R+ D+  + K+  +  A ++ DMAHI+GLVAAG  PSP  YA V  TTTHK+L GPRG MI    G
Sbjct:   28 LELIASENIASPAVMAAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLARDRAKELFQADY----ANVQPHSGSQANMGVYFALLEPGDTVLGMDLSHGGHLTHG-----SPVSFSGRIFNFIHYGVKEKTGTIDYDQLRSLAKEHKPKLIVAGASAYPRIIDFPELEKIARETGAYLMVDMAHIAGLVAAGEHPSPLPYADVVTTTTHKTLRGPRGGMILSNKG 243          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.745e-57
Identity = 111/223 (49.78%), Postives = 153/223 (68.61%), Query Frame = 2
Query:   23 LKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            LKG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI++ DMAH +GL+AAG++ +P +YAH+  +TTHK+L GPRG +I
Sbjct:   19 LKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---WA-NVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGVI 232          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.321e-56
Identity = 111/220 (50.45%), Postives = 151/220 (68.64%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYD++E+ A   +PKLIVAGASAY R+ D++R R++ +K  A ++ DMAHI+GLVAAG+ P+P  YA V  TTTHK+L GPRG  I
Sbjct:   28 IELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAEH----ANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAI 238          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.321e-56
Identity = 111/220 (50.45%), Postives = 151/220 (68.64%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYD++E+ A   +PKLIVAGASAY R+ D++R R++ +K  A ++ DMAHI+GLVAAG+ P+P  YA V  TTTHK+L GPRG  I
Sbjct:   28 IELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAEH----ANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAI 238          
The following BLAST results are available for this feature:
BLAST of EY720587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_YEAST1.039e-7759.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ENCCU5.717e-6854.59Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_EUBR31.195e-5751.82Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_ACIBL2.038e-5748.54Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA_THETN2.662e-5751.36Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_NITSB2.662e-5753.18Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_DESAA3.476e-5753.33Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_BACTN7.745e-5749.78Serine hydroxymethyltransferase OS=Bacteroides the... [more]
GLYA_THEPX1.321e-5650.45Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEP31.321e-5650.45Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-E09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720587 ID=EY720587; Name=EY720587; organism=Citrus sinensis; type=EST; length=818bp
CACGCGTCCGTTTTGTGTGATTTTGAAGGGACTTGAACTCATTCCTTCAG
AGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACC
AACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGA
GTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCCCTGGAAGCAT
TTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGA
TCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAG
GATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATC
AGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATG
CCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGA
GAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTG
CTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAA
CAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGGTTGGTTGC
TGCTGGTGTCATCCCTTCACCTTTTGAGTATGCACATGTTGGTGACACCA
CAACTCACAAATCACTTCCTGGGCCACGTGGCACCATGATCTCCTTTAGG
ACGGGAGTGACAGACATTACAAACCCGGGAAGGGGGTGTCTCTGATTATG
AAGAGAAAGGAAGTCAGCGGGCTTGCGTGAAGGCCAGGTGGGCGGAATAG
CGGGGGATTAGTGGTTAG
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