CX672130

Overview
NameCX672130
Unique NameCX672130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672130 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = -3
Query:  424 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES-TREDLIKDALMAI 771
            DGR L    R E  ++   Y++P+P+     +L    Q  T  +  RP+GV  +  G+D+ GAHLY   PSG+Y+ Y+  A G   Q+AK  LE+  ++  E  +  + +K A   I
Sbjct:   84 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200          
BLAST of CX672130 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = -3
Query:  436 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSEST-REDLIKDA 771
            DGR +    +SE  +Y   Y  P+ V  L  ++A    +CT   W RP+G G+++ G D  G  LY   PSG  ++Y   A+G   QAAKT +E+     SE T RE +++ A
Sbjct:   84 DGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKL--KLSELTCREGIVEVA 194          
BLAST of CX672130 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = -3
Query:  313 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVC---TQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 771
            D R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++    AIGS S+ A + L+ +F    + T ++    AL  +++ ++ +   ++   V +      +H+     V+ +I
Sbjct:   84 DARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFN--KDLTLQEAETIALSILKQVMEEKVTPNN---VDIAKVAPTYHLYTPSEVEAVI 234          
BLAST of CX672130 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 42/154 (27.27%), Postives = 71/154 (46.10%), Query Frame = -3
Query:  313 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 771
            D RVL    R EC +Y  T E P+ V  +   +A+  Q  TQ   +RP+G+ +L+ G D  G   L+   PSG Y+EY A A G   +  + YLE ++   +       +K  + ++ + +   +    I  +  V       +L  E ++ L+
Sbjct:   80 DARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPGSQNIEIAVMKKVNDELQQRVLSTEEIEALL 233          
BLAST of CX672130 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 47/158 (29.75%), Postives = 82/158 (51.90%), Query Frame = -3
Query:  313 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWK-----RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 771
            D R L    R E  N+ + Y+ P+ V  +   ++D +    + S K     RP+GV LL+AG+DE G  L+   PSG + E+ A A G+ ++AA++ L  ++ N S + RE  I  AL  +++ ++ +    ++    V    + F I+D   ++ LI
Sbjct:   84 DARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKY-NKSMTLREAEIL-ALSTLKQVMEEKLNSKNVEVALVTVEKKKFEIMDTAFIENLI 239          
BLAST of CX672130 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 42/129 (32.56%), Postives = 68/129 (52.71%), Query Frame = -3
Query:  391 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAI-GSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKS 771
            D  +L  Y R     + Y Y+ P+PV +LV Q+ D  Q  TQ    RP+GV  L AG D   G  LY + PSGN+  ++A +I G  SQ A++ L   ++   + + ++ ++ AL  + +T+    + S
Sbjct:   83 DANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYK--PDISLKEALQLALKVLTKTMDRSNINS 209          
BLAST of CX672130 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 47/154 (30.52%), Postives = 73/154 (47.40%), Query Frame = -3
Query:  313 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 771
            D RVL    R E      +Y   + V  L  ++ D  Q  TQ    RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ EN + S   +L   AL    E L+ E +  +I    +  +G+    +  + ++K++
Sbjct:   86 DARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEELKPENIDMAI----IKDSGKLVEKISVDEIEKIV 235          
The following BLAST results are available for this feature:
BLAST of CX672130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
PSA3_YEAST1.529e-1133.33Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_ORYSJ1.529e-1136.28Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA5_SOYBN1.997e-1128.85Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA7_CAEEL2.608e-1127.27Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA5_ENTHI2.608e-1129.75Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA4_DICDI4.449e-1132.56Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSMA_METMP9.911e-1130.52Proteasome subunit alpha OS=Methanococcus maripalu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B07-D13-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672130 ID=CX672130; Name=CX672130; organism=Citrus sinensis; type=EST; length=773bp
GTTTGTACTGATAAGGCAAGATAAATTGCACCATAAGCGGAAAAATAAAT
TGTCCAACAGAATGATTTCCCGAAGTGCAACCCATATTCCATGGAACCCA
TCAAACACATGCTTAAACTCCTCATCTAAAGACGAAGACGAAGAAGCTGA
CTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGCTACACCCTCGTCTG
CTGGAGCACCCTGTTCTGAAGCTGCGCCTCCTTCTGCAGCACTGCCTCCT
TCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCTTCAGTGCCAGCAAT
GTCAAATGAATCAATTAACTTTTGTACAGTTTCTTGATCTAAAATATGAA
ATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAATAGAACTCTTTAGT
GTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGAGCGTCCTTGATCAG
ATCTTCTCTTGTAGATTCTGAAAAGTTCTCAAACCTGCGTTCCAAGTATG
TCTTTGCAGCTTGAGATCGGGACCCAATGGCAAATGCTTGATACTCAAAA
TAGTTCCCACTTGGGCAGTTATAATAAAGGTGGGCTCCTTTTTCATCCAA
GCCAGCAACCAGCAGGCCAACACCATATGGCCGTTTCCATGAGCGCTGGG
TACAGACCTGAGCCTTGTCAGCGAGCTGGACAACAAGGCGGCCGACAGGA
AGCGGCGACTCGTAAGTGTAACTGTAGTTAATACACTCGGATCGCATGTA
CCGAGACAGAACACGGCCGTCGG
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