CX672123

Overview
NameCX672123
Unique NameCX672123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.335e-82
Identity = 140/241 (58.09%), Postives = 173/241 (71.78%), Query Frame = -3
Query:  197 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 916
            +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFP FG +GN   RKRE+AAF  QT HETTGGW  AP G ++WGYC+ ++ +P S            PG+ YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+  +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.855e-80
Identity = 133/245 (54.29%), Postives = 175/245 (71.43%), Query Frame = -3
Query:  197 TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 931
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F GFG +G++  +K+E+AAF AQT HETTGGW  AP G YAWGYC++ + +                 +YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.870e-80
Identity = 139/247 (56.28%), Postives = 172/247 (69.64%), Query Frame = -3
Query:  197 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 934
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++   A+            PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 8.306e-80
Identity = 137/244 (56.15%), Postives = 173/244 (70.90%), Query Frame = -3
Query:  197 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 925
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.850e-79
Identity = 138/247 (55.87%), Postives = 173/247 (70.04%), Query Frame = -3
Query:  197 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 934
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++   +S            PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 295.434 bits (755), Expect = 3.156e-79
Identity = 136/244 (55.74%), Postives = 172/244 (70.49%), Query Frame = -3
Query:  197 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 925
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:   74 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 9.184e-79
Identity = 136/232 (58.62%), Postives = 169/232 (72.84%), Query Frame = -3
Query:  251 GHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCG 940
            G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F GFG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +CG
Sbjct:   70 GPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 2.046e-78
Identity = 138/257 (53.70%), Postives = 174/257 (67.70%), Query Frame = -3
Query:  197 CGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 958
            CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +  +          P     +YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+  +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:   61 CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.732e-77
Identity = 132/249 (53.01%), Postives = 172/249 (69.08%), Query Frame = -3
Query:  197 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSP-ASSDXXXXXXXXPLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 934
            G  G  +  I+SR +F+ +L +RNDA CPA+ FYTYDAF+ AA AFP F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +    SD        P     +YYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:   73 GGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CX672123 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 5.039e-77
Identity = 130/242 (53.72%), Postives = 167/242 (69.01%), Query Frame = -3
Query:  194 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 916
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+                 PG+ Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
The following BLAST results are available for this feature:
BLAST of CX672123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_ORYSJ2.335e-8258.09Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA2.855e-8054.29Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIC_SECCE4.870e-8056.28Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SECCE8.306e-8056.15Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU1.850e-7955.8726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU3.156e-7955.7426 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI4_SOLTU9.184e-7958.62Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ2.046e-7853.70Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ1.732e-7753.01Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC5.039e-7753.72Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B04-D7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672123 ID=CX672123; Name=CX672123; organism=Citrus sinensis; type=EST; length=960bp
TTTTTTTTAGACTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACT
TACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGT
GACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAA
ACGTTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAA
GGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTT
GCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCC
CAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCG
TATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTC
GTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCC
AGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTAGG
TCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTA
ATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCATAGTATTGCCCTG
GCAAGGGACATGGACAGTAAGGATAACAGTAGTCGGACGACGCAGGGCTA
ACTTGCCTAATATAGCAATATCCCCAAGCATATTCTCCACCAGGTGCATC
GGTCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCAA
TTTCTCTTTTACGCATGGTTTCATTTCCAGAGTTACCAAAGCCTGGAAAA
GCTTGGGCTGCCTCTATAAAAGCATCATAAGTGTAGAAGCCTCTGGCAGG
GCATCGGGCATCATTTCTATACGGAAGCAAGTCTTCAAACATCTCCCTTG
AGATGATCTTGCCCAGTTCACCGCCATCCGTCCCGTGGCCAGTATCACGT
TCACCGCACA
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