CX672120

Overview
NameCX672120
Unique NameCX672120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_MYCS2 (10 kDa chaperonin OS=Mycobacterium smegmatis GN=groS PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.644e-20
Identity = 47/96 (48.96%), Postives = 70/96 (72.92%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_MYCBT (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.644e-20
Identity = 47/96 (48.96%), Postives = 70/96 (72.92%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_MYCBP (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.644e-20
Identity = 47/96 (48.96%), Postives = 70/96 (72.92%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_MYCBO (10 kDa chaperonin OS=Mycobacterium bovis GN=groS PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 8.644e-20
Identity = 47/96 (48.96%), Postives = 70/96 (72.92%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.474e-19
Identity = 47/97 (48.45%), Postives = 70/97 (72.16%), Query Frame = 2 
Query:  575 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 862
            +  +KPL+DRVF+KV  +EE TAGGL L + +KEKP +G V+A+GPG  +E+G+R+ L I  G+ V+YSKYAG D K G++   Y+ L   +++AV+
Sbjct:    8 VSTVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTE--EYVLLSEKDILAVV 102

HSP 2 Score: 90.1225 bits (222), Expect = 1.802e-17
Identity = 40/94 (42.55%), Postives = 66/94 (70.21%), Query Frame = 2 
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +++KPL DRV VK+   EEKT GG++LP  A+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_MYCUA (10 kDa chaperonin OS=Mycobacterium ulcerans (strain Agy99) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.474e-19
Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K   G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YGGEEYLILSARDVLAVVS 99

HSP 2 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYGGEEYLILSARDVLAVV 98
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_MYCMM (10 kDa chaperonin OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.474e-19
Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K   G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YGGEEYLILSARDVLAVVS 99

HSP 2 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYGGEEYLILSARDVLAVV 98
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 2 
Query:  575 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 856
            +  +KPL DRVF+KV+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIK-LGGDDYVLLTEKDILA 100

HSP 2 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 2 
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 553
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK         + VK G +V+YSKYAGT+++  G +++++ E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_RHOSR (10 kDa chaperonin OS=Rhodococcus sp. (strain RHA1) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVG G ++E+GNR P+ +  G+TV+YSKY G + K + G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYA-GQEYLILSARDVLAVVS 98

HSP 2 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVGEG+   +  ++ + VK G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYAGQEYLILSARDVLAVV 97
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_RHOOB (10 kDa chaperonin OS=Rhodococcus opacus (strain B4) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.926e-19
Identity = 45/95 (47.37%), Postives = 69/95 (72.63%), Query Frame = 2 
Query:  581 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 865
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVG G ++E+GNR P+ +  G+TV+YSKY G + K + G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYA-GQEYLILSARDVLAVVS 98

HSP 2 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 562
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVGEG+   +  ++ + VK G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYAGQEYLILSARDVLAVV 97
The following BLAST results are available for this feature:
BLAST of CX672120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_MYCS28.644e-2048.9610 kDa chaperonin OS=Mycobacterium smegmatis GN=gr... [more]
CH10_MYCBT8.644e-2048.9610 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]
CH10_MYCBP8.644e-2048.9610 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]
CH10_MYCBO8.644e-2048.9610 kDa chaperonin OS=Mycobacterium bovis GN=groS P... [more]
CH10_NOSP71.474e-1948.4510 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]
CH10_MYCUA1.474e-1948.9610 kDa chaperonin OS=Mycobacterium ulcerans (strai... [more]
CH10_MYCMM1.474e-1948.9610 kDa chaperonin OS=Mycobacterium marinum (strain... [more]
CH10_SYNY31.926e-1947.8710 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_RHOSR1.926e-1947.3710 kDa chaperonin OS=Rhodococcus sp. (strain RHA1)... [more]
CH10_RHOOB1.926e-1947.3710 kDa chaperonin OS=Rhodococcus opacus (strain B4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_15B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672120 ID=CX672120; Name=CX672120; organism=Citrus sinensis; type=EST; length=890bp
CTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGTCATT
GCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTCTATC
CATTGCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAATGACT
TCAAGGGCAGTGATGGTACCAACTACATTGCTTTAAGAGCTTCTGAAGTG
ATGGCTGTGCTCTCTTAGTTGTCTGTGTTTACTTGAGCGA
back to top