CX672114

Overview
NameCX672114
Unique NameCX672114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_BACFN (Serine hydroxymethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=glyA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.429e-47
Identity = 98/202 (48.51%), Postives = 131/202 (64.85%), Query Frame = 1
Query:  208 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            D  I DIIE E  RQ KG+ELI SENF S  VM+A+GS +TNKY+EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y L + TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI++ DMAH
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMEAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLKQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAH 196          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSL (Serine hydroxymethyltransferase OS=Geobacter sulfurreducens GN=glyA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.231e-46
Identity = 96/206 (46.60%), Postives = 134/206 (65.05%), Query Frame = 1
Query:  196 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            LE  DP++A+ I HE  RQ   LELI SENF S +V++A GSVMTNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A   +PK+IV GASAY R  D+   R + +K  A+++ DMAH
Sbjct:    4 LETFDPQVAEAIRHETERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKMIVVGASAYPRTIDFAAFRIIADKVGAVIMVDMAH 200          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.608e-46
Identity = 98/206 (47.57%), Postives = 133/206 (64.56%), Query Frame = 1
Query:  196 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            L+  D +I  IIE E  RQ  G+ELI SENFTS SVM+A+GS +TNKY+EGYPG RYYGG   +D AE L + R  + F  +     VNVQ  SGS +N  VY ++LKP D ++ + L HGGHL+HG      K+S     +  + Y LN  T  IDYD++ + A   +PK+IV+GASAY R  D+++IR++C++  A M+ DMAH
Sbjct:    6 LKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTHG-----SKVSFSGKLYNFVSYGLNSDTEIIDYDEMRELALKHKPKMIVSGASAYPRKIDFKKIREICDEVGAYMMVDMAH 202          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.608e-46
Identity = 98/206 (47.57%), Postives = 133/206 (64.56%), Query Frame = 1
Query:  196 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            L+  D +I  IIE E  RQ  G+ELI SENFTS SVM+A+GS +TNKY+EGYPG RYYGG   +D AE L + R  + F  +     VNVQ  SGS +N  VY ++LKP D ++ + L HGGHL+HG      K+S     +  + Y LN  T  IDYD++ + A   +PK+IV+GASAY R  D+++IR++C++  A M+ DMAH
Sbjct:    6 LKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTHG-----SKVSFSGKLYNFVSYGLNSDTEIIDYDEMRELALKHKPKMIVSGASAYPRKIDFKKIREICDEVGAYMMVDMAH 202          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.608e-46
Identity = 96/206 (46.60%), Postives = 139/206 (67.48%), Query Frame = 1
Query:  196 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDYDQL+K A   RPK+IV+GASAY R+ D+E+IR++C++  A M+ DMAH
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFVAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPRIIDFEKIREICDEIDAYMMVDMAH 202          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.101e-46
Identity = 98/203 (48.28%), Postives = 133/203 (65.52%), Query Frame = 1
Query:  205 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            VDPE+A+ IE E+ARQ   LELI SENF S +VM A GSVMTNKY+EG PGARYYGG EY+D+ E L + R  E F  +      NVQ  SG+ +N  VY A L+P   IM ++L HGGHL+HG      K++    +F  + Y +N  T  IDY++L + A   RP++IVAGASAY R+ D+++ R++ ++  A++  DMAH
Sbjct:   11 VDPEVAEAIEKEEARQNNKLELIASENFVSRAVMAAQGSVMTNKYAEGLPGARYYGGCEYVDIVEELARDRVKEIFGAE----HANVQPHSGAQANTAVYFAALQPGQTIMGMNLNHGGHLTHG-----SKVNISGKYFNIVDYGVNRDTERIDYEELREIALKARPQMIVAGASAYPRILDFKKFREIADEAGALLFVDMAH 204          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.101e-46
Identity = 96/202 (47.52%), Postives = 133/202 (65.84%), Query Frame = 1
Query:  208 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E++  +R  + F  +   W  NVQ  SG+ +N  V+ A+L P D  + L+L HGGHLSHG       +++  + +    Y + E TG +DYDQ+E+ A   +PKLIV G SAY+R +DY+R+R++ +K  A+++ DMAH
Sbjct:    4 DNIIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSETIAIERLKKLFNAE---W-ANVQPHSGAQANAAVFFAVLNPGDTFLGLNLSHGGHLSHG-----SPVNSSGVLYHATEYNVKEDTGRVDYDQMEEVALREKPKLIVGGGSAYSRDWDYKRMREIADKVGALLMIDMAH 196          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.101e-46
Identity = 97/206 (47.09%), Postives = 134/206 (65.05%), Query Frame = 1
Query:  196 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            L   DP IAD+IE E  RQ +GLELI SEN+TS++VM+A GSV+TNKY+EG PG RYYGG E++D  E L  +RA + F         NVQ  SG+ +N  V+TALL+P D I+ + L HGGHL+HG       ++    ++    Y ++  TG IDYD L   A   RPKLI +GASAY R+ D+ R+R++ ++  A+++AD+AH
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG-----SPVNFSGKWYNVHFYGVDAQTGQIDYDDLASKARAIRPKLITSGASAYPRIIDFARMRQIADEVGALLMADIAH 201          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.743e-46
Identity = 97/202 (48.02%), Postives = 135/202 (66.83%), Query Frame = 1
Query:  208 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            DPEIA  I  E  RQ   +ELI SEN+ S +VM A+GS++TNKY+EGYPG RYYGG E +D  E L ++RA E F  +     VNVQ  SG+ +N  V  A+LKP D IM ++L HGGHL+HG       ++    +F  +PY +N+  G+IDYD++E+ A   +PK+I+AGASAYAR  D++R R++ +K  A+++ DMAH
Sbjct:   11 DPEIASAITDEFERQNSHIELIASENWVSPAVMSAMGSILTNKYAEGYPGRRYYGGCECVDEVEELARERAKELFGAE----YVNVQPHSGAQANMAVQFAILKPGDTIMGMNLDHGGHLTHG-----SPVNFSGSYFHVVPYGVNDE-GFIDYDKVEEIALECKPKMIIAGASAYARTIDFKRFREIADKVDAVLMVDMAH 202          
BLAST of CX672114 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.743e-46
Identity = 103/209 (49.28%), Postives = 130/209 (62.20%), Query Frame = 1
Query:  187 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 813
            N  L   DPEIA  I  E  RQ   LELI SENF S +V++A GSV+TNKY+EGYPGARYYGG EY+D+ ES+  +RA E F         NVQ  SG+ +N   Y A L+P D IM + L HGGHL+HG      KI+    +F  +PY + E TG IDYD++   A   RPKLIV GASAY R  D+ R+R + +   A+++ DMAH
Sbjct:    4 NRSLAETDPEIARAIALEITRQGAKLELIASENFVSRAVLEAQGSVLTNKYAEGYPGARYYGGCEYVDIVESVAIRRAKEIFGAG----HANVQPHSGAQANMAAYFAFLEPGDTIMGMRLAHGGHLTHG-----AKINFSGRYFRYVPYGVEEETGRIDYDRMHAIAREHRPKLIVGGASAYPRELDFARMRAIADDVGALLMIDMAH 203          
The following BLAST results are available for this feature:
BLAST of CX672114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BACFN9.429e-4748.51Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_GEOSL1.231e-4646.60Serine hydroxymethyltransferase OS=Geobacter sulfu... [more]
GLYA_CLOK51.608e-4647.57Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK11.608e-4647.57Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOBK1.608e-4646.60Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_SYNWW2.101e-4648.28Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_PARD82.101e-4647.52Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_CHLSY2.101e-4647.09Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_EUBR32.743e-4648.02Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_DESAP2.743e-4649.28Serine hydroxymethyltransferase OS=Desulforudis au... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15A11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15A11-B21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672114 ID=CX672114; Name=CX672114; organism=Citrus sinensis; type=EST; length=813bp
CATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCTCT
TCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAATG
GCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACGAG
AAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTTGA
GGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACGAC
AATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTATCC
GTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGATA
TCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGAAT
CCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAAAA
TGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAAGT
CTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCTTC
CTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGATA
TCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAGAG
CACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTTCA
GGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTATGAT
TATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAATGTTGGC
AGATATGGCACAC
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