CX672085

Overview
NameCX672085
Unique NameCX672085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 38/135 (28.15%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  301 VLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMK 705
            VL V+     R++I  LL+   Y+V  V  G  A E L       + SH++          +L++T+  +P ++G+ LL  + E  + ++IPV++MSS++    + +C+  GA ++ +KP+R ++L  L  H+ +
Sbjct:   39 VLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLK------EKSHNI----------DLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWR 157          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: ARR21_ARATH (Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  292 QFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTK 711
            + +V+ VDD  +   ++ R+L+ S Y+V  VD   KAL  L +  D+                ++L+ITDY MPGM G  L K+I  +    ++PV++MSS+   ++    L  GA  F  KP+  +DL K+    +  K
Sbjct:   15 KINVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRDN----------------IDLIITDYYMPGMNGLQLKKQI--TQEFGNLPVLVMSSDT--NKEEESLSCGAMGFIPKPIHPTDLTKIYQFALSNK 134          
BLAST of CX672085 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 40/138 (28.99%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  313 DDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHEDDGQSSHSVYPNMHQEVGVNLVITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHLMKTKIKDQI 726
            DDS   R +I  LL+   Y+V     G KA + L                  +   ++LV+T+  +P M+G+ LL  I E  + ++IPV++MSS +  S + +C+ +GA +F +KP+R ++L  L  H+ + ++   +
Sbjct:   51 DDST--RHIICALLRKCGYRVAAASDGVKAWDIL----------------KEKSFNIDLVLTEVELPLMSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWRKQLSSGV 170          
The following BLAST results are available for this feature:
BLAST of CX672085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
APRR9_ARATH3.694e-1128.15Two-component response regulator-like APRR9 OS=Ara... [more]
ARR21_ARATH4.825e-1131.43Putative two-component response regulator ARR21 OS... [more]
PRR95_ORYSJ6.302e-1128.99Two-component response regulator-like PRR95 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14H02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14H02-O4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672085 ID=CX672085; Name=CX672085; organism=Citrus sinensis; type=EST; length=807bp
ATTTTCTTATTTTATTCTTCTTCTTTCTATTTGTACTGTAATTAAATATA
TATATATATTATATTCAGCATTGCTTGCTCTGTAATTCAAAGCCCAATCA
ACTAAGAAAATTTGCAAGATTTGGGATCAAATCTGGTCGGATTTTTGCTC
TTCCTTCTTTTTTTTTTTCCATTACAAAACTAGCAACCACCTCTTCATTT
CTCAAACAAACACAAAACCCAAATACATTGATTAATTCTTATTCATCAAA
TGGGCATGGCGGCAGCAGCGGCAGCAGCTGTAGCAGAGTCGCAGTTTCAT
GTTTTAGCAGTTGATGATAGCATTATCGACAGGAAGCTTATTGAGAGACT
CCTCAAGACCTCTTCATATCAAGTTACTACAGTTGATTCTGGTAGTAAAG
CTCTAGAATTTCTGGGATTACATGAAGATGATGGCCAAAGCAGCCACTCT
GTTTATCCAAACATGCATCAGGAGGTGGGAGTAAATCTTGTGATCACAGA
CTACTGTATGCCGGGAATGACTGGCTATGATTTGCTCAAGAAAATCAAGG
AATCTTCATCTCTAAGGGACATACCAGTGGTGATAATGTCATCTGAGAAT
GTTCCTTCAAGAATCAGCAGATGTCTAGAAGAGGGTGCAGAAGAATTCTT
TTTGAAGCCAGTCCGATTGTCGGATTTGAATAAACTGAAACCTCATTTGA
TGAAAACCAAAATTAAAGATCAAATTAAACAACAATCGCAACAGCAACAA
GAAGAAGAATCAGATGAATCTGATTTCCAATCACCATCACCACCACAGCA
ACAACCA
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