EG358318

Overview
NameEG358318
Unique NameEG358318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EG358318 vs. ExPASy Swiss-Prot
Match: PDC_ASPPA (Pyruvate decarboxylase OS=Aspergillus parasiticus GN=pdcA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 53/189 (28.04%), Postives = 89/189 (47.09%), Query Frame = 3 
Query:   21 EKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPL-RVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLG--YAQ----------SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 548
            EK+V+  P+ + + N   F  + +  F++ L+++L  +      +  ++      P+  P + + +    ++     L +   ++ ETG   +      LP          + SIG+ + A LG  +AQ          S+   R I  IGDGSFQ+T Q++ST++      IIFLINN GYTIE  IH
Sbjct:  300 EKSVLFSPNSIQV-NKDVFRDLPVGYFIEQLTQQLDISRIPTHKHDLVHPSLRTLPEVSPTDLVTQTGGFWKRFSPFLRTGDIILGETGTPGYGVNDFILPPQTRLFKPATWLSIGYMLPAALGASHAQRDLVASDQYHSLSNPRTILFIGDGSFQMTVQELSTIIHQKLNVIIFLINNDGYTIERCIH 487
The following BLAST results are available for this feature:
BLAST of EG358318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PDC_ASPPA9.118e-1128.04Pyruvate decarboxylase OS=Aspergillus parasiticus ... [more]

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Properties
Property NameValue
Genbank description6d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0006d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358318 ID=EG358318; Name=EG358318; organism=Citrus sinensis; type=EST; length=557bp
ACTCTCTTCTTCTCAAGAAGGAGAAGGCAGTCATTCTGCAGCCTGATCGT
GTGGTGATTGCTAATGGACCGGCATTTGGTTGTGTTTTGATGAAGGATTT
CCTCAAAGCACTTTCAAAGCGGCTCAAAAGCAACACTACTGCTTATGAGA
ATTACCACAGGATTTATGTTCCTGAGGGGCAACCTCCGAAGTGTGAACCC
AAAGAGCCCTTGAGAGTGAATGTTCTGTTCCAACATATACAGAAGATGCT
GTCTAGTGAAACTGCTGTGATTGCTGAGACAGGGGACTCTTGGTTTAACT
GCCAGAAACTGAAATTGCCTAAGGGATGCGGGTATGAGTTCCAAATGCAA
TATGGATCAATTGGTTGGTCTGTTGGTGCTACTCTTGGATATGCACAGTC
TGTGCCAGAGAAGCGTGTCATTGCTTGCATAGGTGATGGTAGCTTCCAGG
TAACTGCACAAGATGTGTCAACAATGCTGCGATGTGGGCAGAAGACTATA
ATCTTCCTGATTAACAATGGTGGTTACACCATTGAAGTTGAGATCCATGA
TGGACCG
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