EG358315

Overview
NameEG358315
Unique NameEG358315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODB_ASPNG (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus niger GN=sodB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.141e-35
Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = 3
Query:    3 DYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYRVNSSS 512
            DY ALEP IS +IM+LHH+KHHQ YV N N A+     AL+  D + ++ +Q  +KFNGGGH+NHS+FWKNLA           S  SL  AI+  +GS++       A    +QGSGW WL    +   L + TT +QDP+       +P+ G+D+WEHAYYLQY  N +S
Sbjct:   13 DYDALEPIISKQIMELHHKKHHQTYVNNLNAALASQASALDSNDITQLISIQQKLKFNGGGHINHSLFWKNLARYDSPATNLERSAPSLKDAIEKQWGSVKNFTDAFEAVLLGIQGSGWGWLVSSGKTGFLEIVTTKDQDPVTGP----IPVFGVDMWEHAYYLQYLNNKAS 180          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_PROFR (Superoxide dismutase [Mn/Fe] OS=Propionibacterium freudenreichii subsp. shermanii GN=sodA PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.395e-35
Identity = 77/165 (46.67%), Postives = 101/165 (61.21%), Query Frame = 3
Query:    3 DYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            DYSALEP ISGEIM+LHH KHH+AYV   N A+++L +A +K D   + +L+  + FN  GHVNHS+FWKN+AP      E P   LG AID  FGS + +  + +A    +QGSGW  L  D   KR  + T    D         +PLL +D+WEHA+YLQY+
Sbjct:   11 DYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKLEKDLAFNLAGHVNHSVFWKNMAP-KGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKR--INTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYK 172          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_PIG (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Sus scrofa GN=SOD2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.152e-34
Identity = 78/147 (53.06%), Postives = 94/147 (63.95%), Query Frame = 3
Query:   27 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 467
            I+ +IMQLHH +HH AYV N N   E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      LVPLLGIDV
Sbjct:    2 INAQIMQLHHSEHHAAYVNNLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLVPLLGIDV 144          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.152e-34
Identity = 77/165 (46.67%), Postives = 101/165 (61.21%), Query Frame = 3
Query:    3 DYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            DYSALEP ISG+I +LHH KHH AYV   N A+E+L  A    D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT  ++L+     +Q   V     ++PLL +D+WEHA+YLQY+
Sbjct:   12 DYSALEPHISGQINELHHSKHHAAYVAGANTALEKLEAAREAGDHSAIFLHEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_MYCLE (Superoxide dismutase [Mn] OS=Mycobacterium leprae GN=sodA PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.260e-34
Identity = 76/165 (46.06%), Postives = 101/165 (61.21%), Query Frame = 3
Query:    3 DYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            DY+ALEP ISGEI ++HH KHH AYV   N A+ +L +A  K D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L   ID  FGS +    + SA    LQGSGW  LG DT   +L+     +Q   V+    ++PLL +D+WEHA+YLQY+
Sbjct:   12 DYAALEPHISGEINEIHHTKHHAAYVKGVNDALAKLDEARAKDDHSAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGGLATDIDETFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGNKLLTFQLYDQQANVSLG--IIPLLQVDMWEHAFYLQYK 171          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.068e-33
Identity = 81/165 (49.09%), Postives = 98/165 (59.39%), Query Frame = 3
Query:    6 YSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            Y ALEP I+ EIM+LHH KHH  YV   N A+E+L +A    +   VV  L   + FN GGH NHSIFWKNL+P   GGGEP   +L  AI   FGS E      SA    LQGSGW  LG D    RLV+E   +Q   +  +  L PLL +D+WEHA+YLQY+
Sbjct:   12 YDALEPHIAAEIMELHHSKHHANYVNGANAALEKLQKARENGEIGAVVTALSKDLAFNLGGHTNHSIFWKNLSP--NGGGEPT-GALAEAIAKEFGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGGRLVIEQLTDQQGNI--SANLTPLLMLDMWEHAFYLQYK 171          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.395e-33
Identity = 78/172 (45.35%), Postives = 107/172 (62.21%), Query Frame = 3
Query:    6 YSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+
Sbjct:   14 YEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKD-PFGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQ 178          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.395e-33
Identity = 78/172 (45.35%), Postives = 107/172 (62.21%), Query Frame = 3
Query:    6 YSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+
Sbjct:   14 YEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKD-PFGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQ 178          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.821e-33
Identity = 78/171 (45.61%), Postives = 101/171 (59.06%), Query Frame = 3
Query:    6 YSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            Y ALEP I    M++HHQKHH AYVTN N A+E+         + L +  T+    +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG   AL +K++       GSGW WL  D  F +L V +TANQD  V       P++GIDVWEHAYYL+Y+
Sbjct:   14 YEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLVKD-PFGKLHVISTANQDNPVMGG--FAPIVGIDVWEHAYYLKYQ 178          
BLAST of EG358315 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.107e-33
Identity = 75/165 (45.45%), Postives = 99/165 (60.00%), Query Frame = 3
Query:    3 DYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYR 497
            DY ALEP ISG+I +LHH KHH AYV   N AV +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQY+
Sbjct:   12 DYGALEPHISGQINELHHSKHHAAYVKGVNDAVAKLDEARANGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGDRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYK 171          
The following BLAST results are available for this feature:
BLAST of EG358315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODB_ASPNG1.141e-3544.77Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_PROFR7.395e-3546.67Superoxide dismutase [Mn/Fe] OS=Propionibacterium ... [more]
SODM_PIG2.152e-3453.06Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_NOCAS2.152e-3446.67Superoxide dismutase [Mn] OS=Nocardia asteroides G... [more]
SODM_MYCLE6.260e-3446.06Superoxide dismutase [Mn] OS=Mycobacterium leprae ... [more]
SODM_CORDI1.068e-3349.09Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM_THET81.395e-3345.35Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET21.395e-3345.35Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THEAQ1.821e-3345.61Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM_MYCFO3.107e-3345.45Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]

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Properties
Property NameValue
Genbank description10f2 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0010f2, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358315 ID=EG358315; Name=EG358315; organism=Citrus sinensis; type=EST; length=573bp
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACAGAGTA
AACAGCAGCAGTATTGGGGTGTATGTAATAAGAAATGTTGTTGTAAAATG
AATTTGATGTAATGACTCTACTG
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