CX671989

Overview
NameCX671989
Unique NameCX671989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5B_RAT (Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 38/129 (29.46%), Postives = 69/129 (53.49%), Query Frame = 3 
Query:  411 LVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            L +D    H D DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE  + +  ++++     I + H   V   M  ++S ++ E + +
Sbjct:   63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTV 191
[Close]
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5B_MOUSE (Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 38/129 (29.46%), Postives = 69/129 (53.49%), Query Frame = 3 
Query:  411 LVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            L +D    H D DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE  + +  ++++     I + H   V   M  ++S ++ E + +
Sbjct:   63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTV 191
[Close]
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PDS5B_HUMAN (Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 38/129 (29.46%), Postives = 69/129 (53.49%), Query Frame = 3 
Query:  411 LVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            L +D    H D DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE  + +  ++++     I + H   V   M  ++S ++ E + +
Sbjct:   63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTV 191
[Close]
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: PD5BA_XENLA (Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 46/175 (26.29%), Postives = 86/175 (49.14%), Query Frame = 3 
Query:  273 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            G K +    S +E++  L  V      ++Q   +  +  L  +   L +D    H D DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE  + +  ++++     I + H   V   M  ++S ++ E + +
Sbjct:   18 GVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKEQYLNLALH-LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFISRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTV 191
[Close]
BLAST of CX671989 vs. ExPASy Swiss-Prot
Match: APRIN_CHICK (Androgen-induced proliferation inhibitor OS=Gallus gallus GN=APRIN PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 38/129 (29.46%), Postives = 69/129 (53.49%), Query Frame = 3 
Query:  411 LVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDNVFSSMETIISLVLEESEDI 791
            L +D    H D DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE  + +  ++++     I + H   V   M  ++S ++ E + +
Sbjct:   63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTV 191
The following BLAST results are available for this feature:
BLAST of CX671989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PDS5B_RAT7.202e-1229.46Sister chromatid cohesion protein PDS5 homolog B O... [more]
PDS5B_MOUSE7.202e-1229.46Sister chromatid cohesion protein PDS5 homolog B O... [more]
PDS5B_HUMAN7.202e-1229.46Sister chromatid cohesion protein PDS5 homolog B O... [more]
PD5BA_XENLA7.202e-1226.29Sister chromatid cohesion protein PDS5 homolog B-A... [more]
APRIN_CHICK7.202e-1229.46Androgen-induced proliferation inhibitor OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C10-E20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671989 ID=CX671989; Name=CX671989; organism=Citrus sinensis; type=EST; length=795bp
AAAAAATACACACACTCGTTCTCTCTCTCTCTCTCTCGCTCTTTCTAAGC
AAAAACAAAGACGAGAGAAACCCTAACTTTCTCTCTCTAAATTTCTCGTT
CGAATCTCGCTTTTGAATCTTCAATTCTTTGTTTCCGTGTCGTTTTCTAG
GCTTTCAATGGTGTGAAATCGAAGTTCGAGCGTCTGAAATCGAAGGATCT
ATTGGTGTTTTCGTACAGAGAGAAATTATGGCTTCGTCTGATAAGGAGCT
CGAGCAACAGCTCATGGACGCTGGAAATAAGCTTCTAGAACCTCCAGATT
CCGTTGATGAACTCCTTCCTCTTCTTGATCAAGTTGAGAGTTATCTGTCT
AGGGTGGAACAGTCACCTACCAAGTCAATGCAAAATGCACTCACTCCCTC
GCAGAAAGCATTGGTTGCGGACCAACTTTTTGGGCATTCAGATGTTGATG
TGAAAGTTGCAGTGGCTGCATGCATCAGTGAGATAACAAGAATAACTGCA
CCAGAAGCTCCTTATGAGGATGACCAGATGAAGGAAGTCTTTCAATTGAT
TGTATCATCTTTTGAAAATTTGTCTGACAAATCAAGCCGCTCGTATGCTA
AGAGAACCTCAATCCTTGAAACTGTTGCCAAGGTCAGGTCGTGTGTTGTT
ATGTTGGATCTTGAATGTGATGCACTGATTATCGAGATGTTCCAGCATTT
TCTTGAGGCAATAAGGGATGACCACCCTGACAATGTCTTTTCGTCCATGG
AGACCATTATAAGTCTTGTCTTAGAAGAAAGTGAAGATATACCTC
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