CX671986

Overview
NameCX671986
Unique NameCX671986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.834e-44
Identity = 81/123 (65.85%), Postives = 104/123 (84.55%), Query Frame = -2
Query:  384 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 752
            G+VAS++K+DPAKG  +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  I  K+D+RSGK LE+ PK +K+GDA  V M P KP+ VE F++YPPLGRFAVRDM+QTVAVGVIKSV KK+
Sbjct:  307 GFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.008e-44
Identity = 84/123 (68.29%), Postives = 102/123 (82.93%), Query Frame = -2
Query:  384 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 752
            G V  ++K DP K A++F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  +  KIDRR+GK LE+ PKF+K+GDA  VKM+P+K M VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D
Sbjct:  320 GNVCGDTKCDPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.008e-44
Identity = 80/123 (65.04%), Postives = 104/123 (84.55%), Query Frame = -2
Query:  384 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 752
            GYVAS++K++PAKG S FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  I +KID+RSGK +E+ PK +K+GD+  V + P KPMVVETF+EYPPLGRFA+RDMRQT+AVG+I  + +K+
Sbjct:  309 GYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.444e-43
Identity = 80/120 (66.67%), Postives = 103/120 (85.83%), Query Frame = -2
Query:  396 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELE-KEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 752
            G VAS++K+ PA G  +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF E+L+KIDRR+GK +E  EP+++KNGD+  VK++PTKP+ VE F+++PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  309 GNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.748e-42
Identity = 79/122 (64.75%), Postives = 98/122 (80.33%), Query Frame = -2
Query:  387 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 752
            G+VAS+SK+DPA    +F S  I+MNHPG+I  GY PV+DCHT+HIA KF E+LTK D+RSGK  E+ PKFLK GDAG +++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ + KK
Sbjct:  311 GFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.730e-40
Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKE---PKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            G VA +SK+DP +    F +QVI++NHPGQI  GY+PVLDCHT+HIA KF EI+ K+DRR+G  + KE      LKNGDA  V++ P++PM VE+F+EYPPLGRFAVRDMRQTVAVGVIKS  KK P  A
Sbjct:  311 GMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKA 440          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.851e-39
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = -2
Query:  372 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 752
            G VA NSK DP   AS+FT+QVII+NHPG I  GY+PV+DCHT+HI  +FAE+  KIDRR+GK+LE  P  LK+GDA  + + P KP  VE F +YPPLGRFA RD++QTVAVGV+KSV+ K  + A
Sbjct:  326 GNVAGNSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHKAGAAA 452          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 69/105 (65.71%), Postives = 88/105 (83.81%), Query Frame = -2
Query:  438 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 752
            GYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  309 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 69/105 (65.71%), Postives = 88/105 (83.81%), Query Frame = -2
Query:  438 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 752
            GYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  309 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX671986 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.148e-38
Identity = 69/105 (65.71%), Postives = 88/105 (83.81%), Query Frame = -2
Query:  438 GYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 752
            GYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  309 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CX671986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_CRYPV3.834e-4465.85Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_PUCGR5.008e-4468.29Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_PLAFK5.008e-4465.04Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_ENTHI9.444e-4366.67Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_EUPCR2.748e-4264.75Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_DICDI5.730e-4062.31Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A1_XENLA4.851e-3960.63Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_SPOFR9.148e-3865.71Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE9.148e-3865.71Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI9.148e-3865.71Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C09-E18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671986 ID=CX671986; Name=CX671986; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTATTTGAAAATGGCAAACTAGATAGAACATAAAACATCAACAAAC
AACATCTTAAGGAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAA
AATATCCAAGTTTGAACATGACATGGACAACAAAAATAGACTCAATACAG
TAATCTCGCCACCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCT
TGTCGATGGTGACGAATTGTAATTATAACCAGCAAATTGACGACCCAAAC
ATCCAACACATTTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGC
CTATAGACATTACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTT
CACAGCAGACTTGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGC
TCTTGATGACTCCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAA
CGACCAAGTGGGGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGT
GGGAATCATCTTAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCT
CCTTCTCCAGCTCCTTACCAGATCGCCTGTCAATCTTGGTCAAGATTTCA
GCAAACTTGACAGCTATGTGGGAAGTGTGGCAATCAAGAACAGGTGCATA
ACCGTTTCCAATCTGGCCAGGGTGGTTCATGATGATAACTTGGGAGGTGA
AGTTGGATGCCCCCTTGGCGGGATCGTCCTTGGAGTTAGATGCAACGTAA
CCA
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