CX671984

Overview
NameCX671984
Unique NameCX671984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.342e-43
Identity = 95/181 (52.49%), Postives = 120/181 (66.30%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  +EE  S+G L+ +E+  L+     L   IQ G  F+ K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKLPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.342e-43
Identity = 95/181 (52.49%), Postives = 120/181 (66.30%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  +EE  S+G L+ +E+  L+     L   IQ G  F+ K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKLPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.342e-43
Identity = 96/179 (53.63%), Postives = 120/179 (67.04%), Query Frame = -1
Query:  304 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 840
            KK G YD ++L G+T LD++RA TF+AE+ GLDP  V +PV+GGH+GVTILPLLSQV+     +  EI  LT RIQN GTEVVEAKAG GSATLSMA AAA+FA A ++  +G A V+ECAYV        FFA  VRLG   +EE  +LG L+ +E   L    + L G I+ G  F+
Sbjct:  133 KKAGVYDKRKLFGITTLDILRAETFIAELKGLDPTRVTIPVIGGHSGVTILPLLSQVQNVEWSSEEEIIALTHRIQNAGTEVVEAKAGGGSATLSMAQAAARFALALVKASQG-AKVVECAYVEGDGKYARFFAQPVRLGTEGVEEYLTLGKLSAFEEKALNAMLETLQGDIKSGEDFI 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_VIBVU (Malate dehydrogenase OS=Vibrio vulnificus GN=mdh PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.753e-43
Identity = 98/180 (54.44%), Postives = 122/180 (67.78%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GGH+GVTILPLLSQV+     +  EI  LT RIQN GTEVVEAKAG GSATLSM  AA +F  A ++ L+G+  VIE AYV        FFA  V+LG+  +EEI   G L+++E+A L+   + L   IQ GV FV+
Sbjct:  133 KKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVKALQGE-EVIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGMLETLNSDIQIGVDFVK 310          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.753e-43
Identity = 95/181 (52.49%), Postives = 120/181 (66.30%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  +EE  S+G L+ +E+  L+     L   IQ G  F+ K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKLPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLYTLKKDIQLGEDFINK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.289e-43
Identity = 96/181 (53.04%), Postives = 120/181 (66.30%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV    S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG++ +EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVL-GVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKSGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SHEPA (Malate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.289e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            K  G YD  RL GVT LDV+R+ TFVAE  GL+  +V VPV+GGH+GVTILPLLSQV+   S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+  +EE+ + G ++ +E    +     L   IQ G+ FV+
Sbjct:  133 KNAGVYDKNRLFGVTTLDVIRSETFVAEAKGLNVADVKVPVIGGHSGVTILPLLSQVE-GVSFTDAEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVVLGKNGVEEVLAYGEVSAFEANARDAMLDTLQADIQLGIDFVK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.289e-43
Identity = 92/180 (51.11%), Postives = 122/180 (67.78%), Query Frame = -1
Query:  301 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQV P  S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G++ V+ECAYV S      FFA  V LG+  + E   +G L+ +E+  L      L   I+ G +F++
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPQDINVPVIGGHSGVTILPLLSQV-PGISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESGVVECAYVESDGKHARFFAQPVLLGKDGVVERKDIGTLSAFEQNALSSMLDTLKQDIELGETFIK 311          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.289e-43
Identity = 93/181 (51.38%), Postives = 120/181 (66.30%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P +++VPV+GGH+GVTILPLLSQ+ P  S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  IEE  S+G L+ +E+  +E     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKSPSDIEVPVIGGHSGVTILPLLSQI-PGVSFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGEHARFFSQPLLLGKNGIEERQSIGKLSAFEQQAMEGMLDTLKKDITLGEEFVSK 312          
BLAST of CX671984 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.990e-43
Identity = 96/181 (53.04%), Postives = 119/181 (65.75%), Query Frame = -1
Query:  298 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRARIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 840
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+  +EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKLPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGETGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQRSLEGMLDTLKKDITLGEEFVTK 312          
The following BLAST results are available for this feature:
BLAST of CX671984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_SALDC1.342e-4352.49Malate dehydrogenase OS=Salmonella dublin (strain ... [more]
MDH_SALA41.342e-4352.49Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_MANSM1.342e-4353.63Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]
MDH_VIBVU1.753e-4354.44Malate dehydrogenase OS=Vibrio vulnificus GN=mdh P... [more]
MDH_SALG21.753e-4352.49Malate dehydrogenase OS=Salmonella gallinarum (str... [more]
MDH_SHIDS2.289e-4353.04Malate dehydrogenase OS=Shigella dysenteriae serot... [more]
MDH_SHEPA2.289e-4352.22Malate dehydrogenase OS=Shewanella pealeana (strai... [more]
MDH_PECCP2.289e-4351.11Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_ENT382.289e-4351.38Malate dehydrogenase OS=Enterobacter sp. (strain 6... [more]
MDH_SALAR2.990e-4353.04Malate dehydrogenase OS=Salmonella arizonae (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C08-E16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671984 ID=CX671984; Name=CX671984; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTGGCAGAAGTATGAACTCTGATTTTGAATTGATTAAA
ATGATAAGACAGGCGGCAGTTCGTCATCTACATATTCTTTATCCATTCAT
TACAAGAATATCAAAAGAACCAAACCAACCCCACAAAGATGAATCTTTTG
CTTCTTCTTTGTACCTAACTTAATTCCATCTGATTATGGAAAAACGAAAA
CCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGGCAAACA
ACAAAAGCACAACCATTATCATTAGTCACCATGTGATTGGTTACTCATTT
CCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTTTCTTTG
CCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGTGAGTAA
ATTTCCTCAATTCTAGCACGGCCAAGCCGTACCTTGGATGCAAAGAAAGG
GAGTTCAGTCACCGTAGAAGCCACGTATGCACACTCAATAACACTGGCAT
CCCCCCTCAAACCTCGGAGACAAGCATCTGCAAACTTGGCAGCAGCATAT
GCCATGGATAGAGTGGCCGAACCAGCTCCAGCTTTTGCCTCAACTACTTC
TGTACCACCATTCTGGATACGATCTGTCAAGTAGTCAATTTCTGTAGGGG
TGAGAGAGCATGATGGTTTAACCTGAGATAAAAGAGGTAAAATAGTAACC
CCAGCATGACCTCCCACAACTGGAACATCAACTTCCCTGGGGTCAAGACC
CAAGACCTCAGCCACAAAAGTATTGGCTCGAACAACATCAAGCATTGTGA
CTCCCAAAAGTCGCTTTGGATCATAAGTGCCAACTTTCTTGAA
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