FC871792

Overview
NameFC871792
Unique NameFC871792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC871792 vs. ExPASy Swiss-Prot
Match: Y1278_PYRKO (DNA-binding protein TK1278 OS=Pyrococcus kodakaraensis GN=TK1278 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:  102 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDA-KREADERRQM--MLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 398
            ++E IR+R++ EL        Q+   + QKAQE+A KRE +   Q+  ++ +IL+ EARERL R+ LVKPE AR VE ++++  Q GQI E++ + +L  +L
Sbjct:    4 DIEEIRKRKLMEL--------QKKYLEQQKAQEEALKREMELEAQLEAIMRKILTPEARERLGRVKLVKPELARQVELLLVQLYQAGQIRERIDDAKLKRIL 97
The following BLAST results are available for this feature:
BLAST of FC871792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
Y1278_PYRKO8.954e-1141.18DNA-binding protein TK1278 OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BG02FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871792 ID=FC871792; Name=FC871792; organism=Citrus sinensis; type=EST; length=631bp
CATTAAACGGCCACTAGAACCCCAAGGGGAAGGAAGCAGAAACAGAGTTC
AGAGTAGGCAGCGTTTGCTCATCGATCCATTCAAATCAAATGGCTGACCC
TGAACTAGAAGCAATTAGACAAAGAAGAATGCAAGAGCTCATGGCCCAAC
AAGGCGTGGGGAGTCAACAAAATTCTGAGCAGCATCAGAAAGCTCAGGAA
GATGCCAAGAGGGAGGCAGATGAACGGAGACAAATGATGCTTAGCCAGAT
TTTGTCAACCGAAGCACGTGAAAGACTTGCTCGAATTGCTTTGGTGAAAC
CCGAGAAGGCTAGAGGTGTTGAGGACATTATATTGAGATCTGCCCAAATG
GGTCAGATAGTTGAGAAGGTTTCTGAAGAGAGGCTCATATCATTGCTGGA
ACAGATTAACACCCAAACCACCAAACAGACCAAAGTCACAATCCAAAGGC
GCCGGAGTGTTTTGGAAGATGATGATTAACCTTGTGTAATTTCTGGTCAT
CATGGTGTGATACGCAATGCTATTCATGGTTATTGAAATTATGATGTGCT
TTTTCATTGTTATTGACGGTTCACCGTTTTGACATTATCTACAGGGTTTG
TGTTATTTAAAAAAAAAAAAAAAAAAAAAAA
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