CX671958

Overview
NameCX671958
Unique NameCX671958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 59/136 (43.38%), Postives = 89/136 (65.44%), Query Frame = 2
Query:  224 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKK 631
            + F+   LK ELL G++  GFERPS IQ+ +I   + G D++A+A++GTGKTA F I  L+K+D +    Q +IL PTRELA Q  +V   +G  +N++     GGTS++DD+  L    Q++VGTPGR+ D+ ++
Sbjct:   25 DSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQR 160          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 59/136 (43.38%), Postives = 89/136 (65.44%), Query Frame = 2
Query:  224 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKK 631
            + F+   LK ELL G++  GFERPS IQ+ +I   + G D++A+A++GTGKTA F I  L+K+D +    Q +IL PTRELA Q  +V   +G  +N++     GGTS++DD+  L    Q++VGTPGR+ D+ ++
Sbjct:   25 DSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQR 160          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 62/157 (39.49%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  167 KIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGV 637
            +IP        +++T    + F+   L+ ELL G++  GFERPS IQ+ +I   + GSD++A+A++GTGKTA F I AL+K+D +    Q +IL PTRELA Q  +V   +G  ++I+     GG S+++D+  L    Q++VGTPGR+ D+ ++ V
Sbjct:   10 EIPEGQIESNYDEIT----DSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRV 162          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 68/144 (47.22%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  203 DVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKG 634
            DVT T    FE   LK +LL GI+  GFE PS IQ  +I   + G D +A+A++GTGKTA F I  LE ID  +   Q ++L PTRELA Q   V   LG ++N+Q     GGTSL  D+ +L    Q++ GTPGR LD+ KKG
Sbjct:   21 DVTPT----FESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMIKKG 160          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.646e-26
Identity = 60/138 (43.48%), Postives = 89/138 (64.49%), Query Frame = 2
Query:  224 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGV 637
            + F+   LK ELL G++  GFERPS IQ+ +I   + G D++A+A++GTGKTA F I  L+KID +    Q +IL PTRELA Q  +V   +G  +++      GGTS++DD+  L    Q++VGTPGR+ D+ ++ V
Sbjct:   23 DSFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRV 160          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.646e-26
Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  230 FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKK 631
            FE   LK +LL GI+  GFE PS IQ  +I   + G D +A+A++GTGKTA F I  L+ ID +    Q +IL PTRELA+Q   V K LG ++NI      GGT + DDI +L Q  Q++ GTPGR++D+ K+
Sbjct:   28 FESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKR 161          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.646e-26
Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 2
Query:  212 ATKG----NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKK 631
            +TKG      FE   LK +LL GI+  GFE PS IQ  +I   ++G D +A+A++GTGKTA F I  LE ID  +   Q +IL PTRELA+Q   V K LG ++NI      GG ++ +D+ +L Q  Q++ GTPGR++D+ K+
Sbjct:   18 STKGIKVHRTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVIKR 161          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  230 FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKK 631
            FE   LK +LL GI+  GFE PS IQ  +I   ++G D +A+A++GTGKTA F I  LE ID  +   Q +IL PTRELA Q   V K LG ++N+      GGT + +DI +L Q  Q++ GTPGR++D+ K+
Sbjct:   28 FESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKR 161          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 60/142 (42.25%), Postives = 90/142 (63.38%), Query Frame = 2
Query:  227 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            +F +  L  +LL  I + GF   SPIQE++IP+AL G D++ +A+ GTGKTAAF +P LEKI  +   IQ +++ PTRELA+Q+ +     G+   ++V    GG+S++  I  L     ++VGTPGR+LDL K+    L+D
Sbjct:    2 KFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQD 143          
BLAST of CX671958 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 60/142 (42.25%), Postives = 90/142 (63.38%), Query Frame = 2
Query:  227 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVQLLVGTPGRILDLSKKGVCILKD 652
            +F +  L  +LL  I + GF   SPIQE++IP+AL G D++ +A+ GTGKTAAF +P LEKI  +   IQ +++ PTRELA+Q+ +     G+   ++V    GG+S++  I  L     ++VGTPGR+LDL K+    L+D
Sbjct:    2 KFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQD 143          
The following BLAST results are available for this feature:
BLAST of CX671958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_SCLS11.260e-2643.38ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_BOTFB1.260e-2643.38ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
IF4A_AJECN1.260e-2639.49ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
FAL1_YARLI1.260e-2647.22ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
IF4A_PHANO1.646e-2643.48ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
FAL1_PICST1.646e-2647.01ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
FAL1_CANAL1.646e-2644.44ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
FAL1_DEBHA2.149e-2646.27ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
EXP9_STRR62.149e-2642.25Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN2.149e-2642.25Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14B05-C10-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671958 ID=CX671958; Name=CX671958; organism=Citrus sinensis; type=EST; length=652bp
CCACAACCAGCAATTTCAGCAGCAGCAGCAACAACAACAACAGCAGCAGT
GGCTACGGCGGAACAATTTTCCTGGCGCTGATTCCTCCATTGTTGATGAG
GTCGAGAAGACCGTACAGTCCGAAGCTGCCGTCGACCCGAGTTCCCAAGA
TTGGAAGGCACGGCTAAAGATACCACCCGCTGATACACGCTACAGAACTG
AGGATGTTACGGCCACAAAAGGAAATGAATTTGAGGACTATTTTCTTAAA
CGTGAGCTACTTATGGGAATATTTGAAAAAGGGTTTGAAAGGCCATCACC
TATTCAGGAAGAAAGTATTCCTATTGCTTTAACGGGTAGCGATATTCTTG
CCAGAGCTAAGAATGGTACCGGGAAGACAGCTGCCTTCTGCATTCCAGCA
TTGGAAAAGATTGACCAAGATAACAATGTGATTCAAGTTGTTATCCTTGT
TCCAACAAGAGAGTTGGCTCTTCAGACATCCCAAGTCTGTAAGGAGCTGG
GGAAGCATTTGAATATTCAAGTCATGGTTACCACTGGTGGAACCAGTCTT
AAGGATGATATTATGCGTTTGTATCAACCTGTTCAATTGCTTGTTGGAAC
TCCTGGAAGAATACTAGATCTTTCTAAGAAGGGTGTTTGCATTTTGAAAG
AT
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