CX671912

Overview
NameCX671912
Unique NameCX671912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.364e-15
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  278 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAM---QENAAPA 553
            RK   KK  +V  I+        D Y WRKYGQKP+K SP+PR YY+C+T   C  +K VER+  DP+ +I TYEG+H H +  +   +E ++P+
Sbjct:   96 RKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTT-TWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPS 189          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.088e-15
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = -1
Query:  269 RVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG 544
            R  +  RV   ++   DI  D Y WRKYGQK +KG+P PR YYKC T  GC   KHVERA DD   ++ TY G+H H   A + N++  G G
Sbjct:  353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-TANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAAR-NSSHVGAG 442          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.033e-15
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  314 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 553
            RKN  + +    +  S  +D   D + WRKYGQK + G+ YPR YY+C T   C ARKHVERA DDP   I TYEG+H H
Sbjct:  327 RKNEKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRC-TSANCRARKHVERASDDPRAFITTYEGKHNH 405          

HSP 2 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = -1
Query:  308 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQ 484
            D Y+WRKYGQK +KGS  PR YYKC T   CP +K VER+ +     IV Y+GEH HS+
Sbjct:  166 DGYNWRKYGQKQVKGSECPRSYYKC-THPKCPVKKKVERSVEGQVSEIV-YQGEHNHSK 222          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.880e-15
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  263 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLV 484
            D Y WRKYGQK +KG+P+PR YY+C T  GCP RKH+E A ++   +I+TY+G H H     ++   P    LV
Sbjct:  332 DGYRWRKYGQKMVKGNPHPRNYYRC-TSAGCPVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSMLV 404          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.533e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = -1
Query:  311 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 484
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  DD ++LI TYEG H HS
Sbjct:  228 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHS 285          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK55_ARATH (WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.533e-14
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  272 KKTIRVPAISSKIADIPPDE-YSWRKYGQKPIKGSPYPRGYYKCSTMR--GCPARKHVERAPDDPTMLIVTYEGEHR--HSQAAMQENAAPAGV 538
            ++T+ V A+ +   D+PPD+ ++WRKYGQK I GS +PR YY+C+  +   CPA+K V+R  DDP    VTY G H   +S A    +A P+ +
Sbjct:  155 EQTVLVAALRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTCYNSTAPTASSATPSTI 248          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.533e-14
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = -1
Query:  311 IDFRKNRVKKTIRVPAISSKI---ADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 562
            +  +K + ++ +R P    K     D+  D Y WRKYGQK +K + +PR YY+C T   C  +K VER  DDP M+I TYEG H HS
Sbjct:  195 LKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRC-TQDKCRVKKRVERLADDPRMVITTYEGRHLHS 280          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.002e-14
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = -1
Query:  251 IDFRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH----SQAAMQENAAPAGVGLVFEST 562
            + +RK RV    R  A +        D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D T+L  TYEG H H    S  AM    + A   L+  S+
Sbjct:  220 LPYRKARVSVRARSDATTVN------DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSS 321          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.002e-14
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = -1
Query:  314 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 526
            RV   +   A +  D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D T+LI TYEG H H
Sbjct:  279 RVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 349          
BLAST of CX671912 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.002e-14
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  314 FRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 556
            F K +V  T+ VP  +S  +    D + WRKYGQK  + +P PR Y++CS    CP +K V+R+ +DP++L+ TYEG H H
Sbjct:  154 FNKAKVS-TVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233          
The following BLAST results are available for this feature:
BLAST of CX671912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
WRK68_ARATH2.364e-1543.16Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK34_ARATH3.088e-1546.74Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK44_ARATH4.033e-1550.00WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRK32_ARATH6.880e-1547.30Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRK72_ARATH1.533e-1458.62Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK55_ARATH1.533e-1442.55WRKY transcription factor 55 OS=Arabidopsis thalia... [more]
WRK13_ARATH1.533e-1443.68Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK47_ARATH2.002e-1440.74Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK42_ARATH2.002e-1450.70Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK18_ARATH2.002e-1443.21WRKY transcription factor 18 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13H04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13H04-O7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671912 ID=CX671912; Name=CX671912; organism=Citrus sinensis; type=EST; length=934bp
TTTTGCACATAATAAAACAATCCCATATCATATAACTACCGAATGACAAT
TTAATTAATTAATTAATTAATTTTTTTTTTTAAATTTTACTCCAACAAAA
TTTACATTAATACCCTCCATCCGACCTTCCATCGGCCCCGCAACAACATC
GATATTAGAAAATGCTACCGCGTCTTGTCATTATCTTCCCACCCACCTTC
CTTTATCAATTCTCTCTCTCTCTACTTTTTCTTTTTTGTTCATTTTCTCA
CGTTGACTCGAAAACCAAACCCACTCCAGCAGGGGCCGCGTTCTCCTGCA
TCGCGGCCTGCGAATGCCGGTGCTCTCCTTCGTACGTCACAATCAGCATC
GTTGGATCGTCTGGTGCCCTCTCCACGTGTTTCCTGGCTGGGCACCCTCT
CATTGTACTGCACTTGTAATAGCCGCGTGGGTATGGTGAGCCCTTGATCG
GCTTTTGACCATACTTCCTCCAAGAATACTCGTCCGGTGGAATATCGGCT
ATTTTTGAACTAATCGCCGGCACTCTAATAGTTTTCTTTACTCGGTTTTT
CCTGAAATCAATTAAAAAAAAATAAATTAGACGTCAACTATTTCTTCCCA
ATATCTCACTATCGTACGCTGTTGGTGCAATCTATTATGAGCTGTGCGTG
TTCTGTCTACGGTCTACGCTAACTCCTAACTGTGTCAAAGTCAAAATCAA
CGTAACCAAGTCTAAGCACGCCTCAGAAAAATGGGAAAATGACAAAACTA
ACACAAATTTCAATACTTTTTTTATTCGAGTCTTTATTGACATCGTTAGG
CGTGCGCTGTCTACTCCTTCGCAGCTATGCGTTTACCCAACAACTCGTTG
ACCGGTAACTCGACCGATTTCTCAGATCGAGTCCGATTCCAACCGTCTCN
AACTCGACCGAATTTCGTAAATAACAAACAAAAT
back to top