CX671895

Overview
NameCX671895
Unique NameCX671895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.062e-28
Identity = 68/162 (41.98%), Postives = 93/162 (57.41%), Query Frame = -1
Query:  176 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 661
            LGK     D     ++A   D S+ W D+KW++   K P+++KGVL  ED             VSNHG RQLD V ++  AL  +  A   R+ V  DGGVR G DV + LALGA G+ IGR   Y+LAA GE GV ++L+++ +E  +AMAL+G R +  I
Sbjct:  211 LGKASGLQD--FMGWLAANFDPSIQWSDLKWIRDAWKGPLVIKGVLDPEDAKAAADIGADGVVVSNHGGRQLDGVLSSARALPAIADAVGDRLTVLADGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTGVRDVASI 370          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.062e-28
Identity = 68/162 (41.98%), Postives = 93/162 (57.41%), Query Frame = -1
Query:  176 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEI 661
            LGK     D     ++A   D S+ W D+KW++   K P+++KGVL  ED             VSNHG RQLD V ++  AL  +  A   R+ V  DGGVR G DV + LALGA G+ IGR   Y+LAA GE GV ++L+++ +E  +AMAL+G R +  I
Sbjct:  211 LGKASGLQD--FMGWLAANFDPSIQWSDLKWIRDAWKGPLVIKGVLDPEDAKAAADIGADGVVVSNHGGRQLDGVLSSARALPAIADAVGDRLTVLADGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTGVRDVASI 370          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.928e-28
Identity = 73/227 (32.16%), Postives = 117/227 (51.54%), Query Frame = -1
Query:  152 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 769
            +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G I +  D G+R G DV + +ALGA  + +GR  +Y+LA  G+ GV  +L+++ +E ++AM L+G +++ EI+ D +V E
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGLLDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLVQE 378          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 72/222 (32.43%), Postives = 112/222 (50.45%), Query Frame = -1
Query:  167 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMD--EANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 769
            +  TVD P  G R  D  +  + P     +  Q +                DLG +     N +GL  Y+       D S++WKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA+G+ GV  +L ++ +E  +AM L+G  S+ +I+ D
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISAD 373          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 72/222 (32.43%), Postives = 112/222 (50.45%), Query Frame = -1
Query:  167 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMD--EANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 769
            +  TVD P  G R  D  +  + P     +  Q +                DLG +     N +GL  Y+       D S++WKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA+G+ GV  +L ++ +E  +AM L+G  S+ +I+ D
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISAD 373          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 72/222 (32.43%), Postives = 112/222 (50.45%), Query Frame = -1
Query:  167 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMD--EANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 769
            +  TVD P  G R  D  +  + P     +  Q +                DLG +     N +GL  Y+       D S++WKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA+G+ GV  +L ++ +E  +AM L+G  S+ +I+ D
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISAD 373          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 74/222 (33.33%), Postives = 113/222 (50.90%), Query Frame = -1
Query:  167 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEAND-----------SGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 769
            +  TVD P  G R  D  +  + P     +  Q +       D+G + + +D           +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA G+ GV  +L ++  E  +AM L+G  S+ EI+ D
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEISGD 373          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 74/222 (33.33%), Postives = 113/222 (50.90%), Query Frame = -1
Query:  167 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEAND-----------SGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 769
            +  TVD P  G R  D  +  + P     +  Q +       D+G + + +D           +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA G+ GV  +L ++  E  +AM L+G  S+ EI+ D
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEISGD 373          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 74/222 (33.33%), Postives = 113/222 (50.90%), Query Frame = -1
Query:  167 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEAND-----------SGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 769
            +  TVD P  G R  D  +  + P     +  Q +       D+G + + +D           +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA G+ GV  +L ++  E  +AM L+G  S+ EI+ D
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNAPLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMILTGTHSVAEISGD 373          
BLAST of CX671895 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 72/222 (32.43%), Postives = 113/222 (50.90%), Query Frame = -1
Query:  167 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL-------DLGKMDEANDSG-LAAY-------------VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 769
            +  TVD P  G R  D  +  + P     +  Q +       D+G +   +D G ++AY             +    D S++WKD++W++     P+++KG+L  ED             VSNHG RQLD V ++  AL  +  A +G + +  D G+R G DV + LALGA  + +GR  VY+LAA G+ GV  +L ++ +E  +AM L+G  S+ EI+ D
Sbjct:  152 LVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGLLGRPHDLGNISAYRGSPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTGTHSIAEISAD 373          
The following BLAST results are available for this feature:
BLAST of CX671895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_CAUCR4.062e-2841.98L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCN4.062e-2841.98L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_SALPC6.928e-2832.16L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_XANOR9.049e-2832.43L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP9.049e-2832.43L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOM9.049e-2832.43L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCP9.049e-2833.33L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC89.049e-2833.33L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCB1.182e-2733.33L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC52.016e-2732.43L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13G06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G06-M11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671895 ID=CX671895; Name=CX671895; organism=Citrus sinensis; type=EST; length=778bp
CAGAAGCTTAAAATAATTCAGACTCAATTAAACATGAACAAGTTCTCCAA
GAAAAAGAAGTAATAGAAAGTAACCAAATTATTGCTCTTTCTTCTATTTT
GCATGCACGTAACTATAACCTGGGAACCGGGCGAGGGAGAGAAGCATCCC
ATTCAGTGACGATGTGATCACGAGTAATCTCTTTGAGTGAGCGGCAACCA
CTTAGTGCCATTGCTAGCTCAAATTCTTCACGCAGCATCTCGAGTACTCT
TCTAACGCCTTTCTCTCCCTCAGCTGCCAATGAGTACACCACTGGTCGTC
CAATAAATATACCAGAGGCTCCAAGTGCCAATGCTTTGAAGACATCAGTT
CCTCGCCTAACACCACCATCCAAGAACACAGGAATACGCCCCTGAGTAGC
TTTCACAACCTCTTCCAGGGCCATGATAGTGGCAGGGACATAGTCAAGTT
GACGAGCTCCATGATTGGATACAATAATCCCAGCTGCTCCAGCTTGAACT
GCAATCCGCGCATCCTCTGCTGTGAGTACACCCTTCACCAGAATTGGCAA
TTTGGTGATTGTTTGAAGCCACTTCACGTCCTTCCAGCTCAGAGAACGAT
CAATTTGACCAGCAACATAGGCAGCAAGCCCAGAGTCATTTGCCTCGTCC
ATCTTGCCAAGGTCCAAACCCTGAAAATTCTTTAATGTCAAAAATGGTGG
TAGAGTGAATCTGTTCTTGATGTCAGCTTCTCTGCGACCCAGCCTCGGGG
TATCAACTGTTAGAGCAATGGCCTTGAA
back to top