CX671815

Overview
NameCX671815
Unique NameCX671815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_OSTTA (Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri GN=Ot01g06320 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.038e-18
Identity = 67/245 (27.35%), Postives = 117/245 (47.76%), Query Frame = -1
Query:  256 VYAHREVSHDEVKSEEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG-VEIRKTIEA--LDQLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQGGKPAANSM--------KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 924
            +    EV+ +E + +  +E A ++          ++  WGSTLYH+DD+PF     L ++P  +  FR KV+   ++R  I A   ++L  +P+   VE  + +P   DL  + S       K   + +        KGGE+ AL R+K +  E              + + G ++S K++PWLA+GC+SPR +  E+++  +                   + W++FEL+WRDFF+F   K+ +
Sbjct:  109 ILTQTEVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCKVRDVIPAPTANELGHVPA--SVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLDFKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYES------------ERVENKSTYWVIFELIWRDFFKFFALKHGN 336          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_VIBPA (Cryptochrome DASH OS=Vibrio parahaemolyticus GN=cry PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.677e-13
Identity = 54/186 (29.03%), Postives = 88/186 (47.31%), Query Frame = -1
Query:  262 TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 819
            +L+    LPF L ++P  +  FR+ V+G++I   I+A  +L  +P     +   +P+L      +SA  S           GGE   L   +++     A   K  ++G    + G  +S K SPWLA+GC+SPR +   LK+   +  A    ND         + W+ FELLWR++F +  + Y
Sbjct:  136 SLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSRLPPMP-----KGAQLPTLSSFYFDESALFS-----------GGEWSGLAHCRRYFFSGLASSYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQTQGA----ND--------STYWIYFELLWREYFYWYARCY 289          
BLAST of CX671815 vs. ExPASy Swiss-Prot
Match: CRYD_IDILO (Cryptochrome DASH OS=Idiomarina loihiensis GN=cry PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.163e-12
Identity = 53/187 (28.34%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  262 STLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 822
            +TL+   +LPF+L ++P  +  FR+KV+ +    +++ ++ L  LP           +L +L              A++  +GGE  AL  L  + +   A   K  ++   D     + S K SPWLA GCLS R +   L+   T          GE+ S    S W+ FELLWR++F +   K+
Sbjct:  145 NTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSLPKNISYPGFKAETLNEL--------------ASDDFEGGERAALTHLTSYFSGESAGTYKQTRNALDD----FSSSTKFSPWLAQGCLSVRQIMAALRAYETEF--------GENES----SYWISFELLWREYFFWYALKH 301          
The following BLAST results are available for this feature:
BLAST of CX671815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CRYD_OSTTA5.038e-1827.35Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_VIBPA1.677e-1329.03Cryptochrome DASH OS=Vibrio parahaemolyticus GN=cr... [more]
CRYD_IDILO3.163e-1228.34Cryptochrome DASH OS=Idiomarina loihiensis GN=cry ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13C10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C10-E19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671815 ID=CX671815; Name=CX671815; organism=Citrus sinensis; type=EST; length=927bp
AAAGGGCAAATGAATTAATTGGCCACCAGATGGAAGAGACAGAAAGTCCC
ATAAGTAATCATTTTATATGGCAATGAAATAGAAGTTTGACAAGGGGGCA
CAAGTAACAAGTAAATTTTGGATTCTCATTAAGATACATGCAAGCAAACA
ACCGCTCTGAAACAATATCTTTTTGCCTCACAGTAGAAATTTCTTGATCT
AAGCAAGGGCACCAGTGCAAGCTGTGGCTGGAACAGCTTCAACCACTTTC
TTTGCAGAGCTGTATTTCTTGGTAATGAATCTGAAGAAATCCCTCCACAG
CAATTCAAACATCAACCAGTTTGATCCAGCACCCGATGAGCCACTTTCAC
CATCATTCCACTTTGAGGCAGCAGAAATACTTGTAGCAGTTTTCTTTAGC
TCATCAAACATGGAACGAGGGGACAGGCATCCCATGGCAAGCCAAGGAGA
AATCTTGCAAGAGAAGTTTGCACCATAAATGCTATCATGGTTGCCATCCT
TGTTTCCCTTGGGTGGTTGTGCTTGGTACTCAGCTGCAAATTTTTTTAGC
CTCTGCAGTGCTTCAGTCTCCCCTCCCTTCATAGAATTGGCAGCTGGCTT
TCCACCCTGAGACATTGCAGCACTCTGGCTGAGACCTAGATCCAACAAGG
AAGGAATATCACCAGGCTCAACATCTCCTCGAGACGGCAATCCCTTCAAC
TGATCCAATGCCTCAATCGTCTTCCGAATCTCCACGCCCTTAACCTTCTC
TCTAAACCCACCATAATTAGTCGGCATTTCCCCCAACTTAAACGGCAAAT
CATCAAGATGGTACAAAGTGCTTCCCCAAAAGTACTTCACTTCAATTCCC
TCGTCTTTCATCGCTGCCTCAATCTTCTCCTCCGATTTAACCTCATCATG
TGACACCTCTCTGTGCGCGTACACTGC
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