CX671795

Overview
NameCX671795
Unique NameCX671795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3227 contig Csv1_Contig3227:574..1412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  506 GIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            GIF++    ++   SR + ++     + S +   +    + G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EH
Sbjct:   36 GIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH 146          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  506 GIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            GIF++    ++   SR + ++     + S +   +    + G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EH
Sbjct:   36 GIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH 146          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  506 GIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            GIF++    ++   SR + ++     + S +   +    + G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EH
Sbjct:   36 GIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH 146          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  506 GIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            GIF++    ++   SR + ++     + S +   +    + G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EH
Sbjct:   36 GIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH 146          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  506 GIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            GIF++    ++   SR + ++     + S +   +    + G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EH
Sbjct:   36 GIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH 146          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.823e-16
Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  629 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EH
Sbjct:   78 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH 147          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.823e-16
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  335 YLSELLAERHKLNPFLPVLPNTYRLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            YL++LL +R +L  F  V  +  RLL++EI RV      AS+   +G++   PLT                                           G +V    +V +PV ++P+FNFVGR+LGPRG + K++E  T C++++RG+GS++D  +E+  RGKP +EH
Sbjct:   78 YLAQLLKDRKQLAAFPNVFTHVERLLDEEIARV-----RASLFQINGVKK-EPLTLP--------------------------------------EPEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEH 201          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 41/111 (36.94%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  506 GIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            GIF++    ++    R + ++     + S     S    + G I +   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EH
Sbjct:   36 GIFNHLERLLDEEIGRVRKDMYNDTLNGSTDKRTSELPDAVGPIAQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH 146          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.305e-16
Identity = 59/172 (34.30%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  335 YLSELLAERHKLNPFLPVLPNTY----RLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            YL +LL E+ KL   LP L   +    RLL++EI RV   + N SV                         NGL  +   E+                    G IV    ++ +PV++YP++NFVGR+LGPRG + K++EA T C++++RGR S++D  +EE  RGKP +EH
Sbjct:   17 YLMQLLNEK-KLMTSLPNLCGIFTHLERLLDEEINRVRKDMYNDSV-------------------------NGLVDKHPLELP----------------EPVGPIVHLQEKLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEH 146          
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 49/169 (28.99%), Postives = 80/169 (47.34%), Query Frame = 2
Query:  332 KYLSELLAERHKLNPFLPVLPNTYRLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            +YL++L+ E+  L  F  +  N  RLL+ EI RV   L                                    FQ+E   +     A           G ++  T ++ +P  +YP++NFVGR+LGPRG + K++E  T C++++RG+GS++D ++E   RGK  +EH
Sbjct:  148 EYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVAL------------------------------------FQTEFPRVELPEPA-----------GDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEH 269          
The following BLAST results are available for this feature:
BLAST of CX671795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
QKI_HORSE6.267e-1737.84Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1[more]
QKI_FELCA6.267e-1737.84Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CHICK6.267e-1737.84Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
QKI_CANFA6.267e-1737.84Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN6.267e-1737.84Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA1.823e-1651.43Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
HOW_DROME1.823e-1632.14Protein held out wings OS=Drosophila melanogaster ... [more]
QKIB_DANRE3.110e-1636.94Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
QKIA_DANRE5.305e-1634.30Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]
GLD1_CAEEL3.802e-1428.99Female germline-specific tumor suppressor gld-1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B11-C21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671795 ID=CX671795; Name=CX671795; organism=Citrus sinensis; type=EST; length=839bp
GTTAGATTAGCGAGTGTGTGTCTGGTCGGGATCATCCCACCAGCTACACA
AATCTGCAGACAGCCGAACGCCACCTTCGTCATCATCAATCATCGCAATC
TTCCGTCCGCCGTACGCTTCTCATCGTCGATCATACCGCTGAAGCCACCG
TCTGGATCTGATAAAGTGACCCGACGGCGACGACCGTAGACACTAACAGC
AGAAAACTAACTTAACGATGGCGTCATCAGGTGGAGGGAGGTTCATGGCC
TACTCGCTGTCACCTTCTGCTCCTCACTCTCCTCACCTCCCCTCTCTCCG
CTCCGCATCCTCCGCTATCCTCGATCAAGAAAAATATCTCTCTGAGTTAC
TAGCTGAGCGTCATAAGCTTAATCCATTCCTGCCTGTATTACCGAATACT
TACCGGCTGTTGAACCAGGAAATTATGCGTGTAACCACACTGTTGGGGAA
TGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCTAGCCCTCTCACCT
CTGGAGGAATATTTTCAAATGGAGGAGCTGATGTGAATGGATTGGCATCA
CGGTTTCAATCAGAAATTTCTGGTTTAATGCAGTCATCATCAGCACAAAA
CTGGCTTAGCTCACAAGGTAGCTCATCGGGTCTTATTGTTAAGAGGACAA
TCAGAGTGGATATTCCAGTCGAAAAATATCCTAATTTCAACTTTGTCGGG
CGCCTCCTTGGTCCTCGAGGCAACTCGCTTAAGCGAGTCGAAGCTAGTAC
AGAATGCCGTGTTCTGATTAGGGGACGCGGCAGTATAAAGGATCCAGCAA
GGGAAGAAATGATGAGAGGAAAACCTGGGTATGAACATT
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