CX671795

Overview
NameCX671795
Unique NameCX671795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3227 contig Csv1_Contig3227:574..1412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 58/175 (33.14%), Postives = 83/175 (47.43%), Query Frame = 2 
Query:  320 LDQEKYLSELLAERHKLNPFLPVLPNTYRLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            + +EKYL EL+AE+  L+P                                   HAS L +  I    G+D      R + E    +   S +N            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y H
Sbjct:    1 MGEEKYLPELMAEKDSLDP--------------------------------SFVHASRLLAEEIEKFQGSD-----GRKEDEEKKYLDVISNKN------------IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAH 126
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 2 
Query:  320 LDQEKYLSELLAERHKLNPFLPVLPNTYRLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            +++EKYL EL+AE+  L+P                                   HAS L +  I    G+D      + + E    +   S +N            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y H
Sbjct:    1 MEEEKYLPELMAEKDSLDP--------------------------------SFVHASRLLAEEIEKFQGSD-----GKKEDEEKKYLDVISNKN------------IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAH 126
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 2 
Query:  320 LDQEKYLSELLAERHKLNPFLPVLPNTYRLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEH 838
            +++EKYL EL+AE+  L+P      +  RLL++EI++     GN     +  L+         I SN                                       +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D  +EE +R     +H
Sbjct:    1 MEEEKYLPELMAEKDSLDPSFV---HAMRLLDEEIVKFQDSEGNKEDGEKKYLD---------IISNKN-------------------------------------IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKH 124
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 56/175 (32.00%), Postives = 82/175 (46.86%), Query Frame = 2 
Query:  320 LDQEKYLSELLAERHKLNPFLPVLPNTYRLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            + +EKYL EL+AE+  L+P                                   HAS L +  I    G+D      + + E    +   S +N            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D  +EE +R  G+  Y H
Sbjct:    1 MGEEKYLPELMAEKDSLDP--------------------------------SFVHASRLLAEEIEKFQGSD-----GKKEDEEKKYLDVISNKN------------IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAH 126
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 55/175 (31.43%), Postives = 82/175 (46.86%), Query Frame = 2 
Query:  320 LDQEKYLSELLAERHKLNPFLPVLPNTYRLLNQEIMRVTTLLGNASVLGQSGLEHASPLTSGGIFSNGGADVNGLASRFQSEISGLMQSSSAQNWLSSQGSSSGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            +DQ+KYL EL+AE+  L+       +  RLL +EI +                                    G   R   E+   +   S +N            +K + RV IPV++YP FNFVG+LLGPRGNS+KR++  T  ++ I G+GS++D  +EE +R  G+  Y H
Sbjct:    1 MDQDKYLPELVAEKESLDASFV---HAMRLLAEEIEKF----------------------------------EGDELRKDGEVKKYLDIISNKN------------IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAH 126
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  653 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y H
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAH 222
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  653 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y H
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAH 222
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  653 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y H
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAH 222
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  653 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y H
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAH 205
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  653 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y H
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFH 122
The following BLAST results are available for this feature:
BLAST of CX671795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
KHDR2_RAT6.485e-1433.14KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_HUMAN6.485e-1432.57KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_XENTR1.106e-1331.79KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE4.203e-1332.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE4.203e-1331.43KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_RAT2.086e-1250.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_MOUSE2.086e-1250.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_HUMAN2.086e-1250.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK2.086e-1250.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_RAT1.352e-1153.13KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B11-C21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671795 ID=CX671795; Name=CX671795; organism=Citrus sinensis; type=EST; length=839bp
GTTAGATTAGCGAGTGTGTGTCTGGTCGGGATCATCCCACCAGCTACACA
AATCTGCAGACAGCCGAACGCCACCTTCGTCATCATCAATCATCGCAATC
TTCCGTCCGCCGTACGCTTCTCATCGTCGATCATACCGCTGAAGCCACCG
TCTGGATCTGATAAAGTGACCCGACGGCGACGACCGTAGACACTAACAGC
AGAAAACTAACTTAACGATGGCGTCATCAGGTGGAGGGAGGTTCATGGCC
TACTCGCTGTCACCTTCTGCTCCTCACTCTCCTCACCTCCCCTCTCTCCG
CTCCGCATCCTCCGCTATCCTCGATCAAGAAAAATATCTCTCTGAGTTAC
TAGCTGAGCGTCATAAGCTTAATCCATTCCTGCCTGTATTACCGAATACT
TACCGGCTGTTGAACCAGGAAATTATGCGTGTAACCACACTGTTGGGGAA
TGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCTAGCCCTCTCACCT
CTGGAGGAATATTTTCAAATGGAGGAGCTGATGTGAATGGATTGGCATCA
CGGTTTCAATCAGAAATTTCTGGTTTAATGCAGTCATCATCAGCACAAAA
CTGGCTTAGCTCACAAGGTAGCTCATCGGGTCTTATTGTTAAGAGGACAA
TCAGAGTGGATATTCCAGTCGAAAAATATCCTAATTTCAACTTTGTCGGG
CGCCTCCTTGGTCCTCGAGGCAACTCGCTTAAGCGAGTCGAAGCTAGTAC
AGAATGCCGTGTTCTGATTAGGGGACGCGGCAGTATAAAGGATCCAGCAA
GGGAAGAAATGATGAGAGGAAAACCTGGGTATGAACATT
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