CX671795

Overview
NameCX671795
Unique NameCX671795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3227 contig Csv1_Contig3227:574..1412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  653 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y H
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFH 122
[Close]
BLAST of CX671795 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:  653 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEH 838
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y H
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFH 122
The following BLAST results are available for this feature:
BLAST of CX671795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
KHDR3_MOUSE1.352e-1153.13KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_HUMAN1.352e-1153.13KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B11-C21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671795 ID=CX671795; Name=CX671795; organism=Citrus sinensis; type=EST; length=839bp
GTTAGATTAGCGAGTGTGTGTCTGGTCGGGATCATCCCACCAGCTACACA
AATCTGCAGACAGCCGAACGCCACCTTCGTCATCATCAATCATCGCAATC
TTCCGTCCGCCGTACGCTTCTCATCGTCGATCATACCGCTGAAGCCACCG
TCTGGATCTGATAAAGTGACCCGACGGCGACGACCGTAGACACTAACAGC
AGAAAACTAACTTAACGATGGCGTCATCAGGTGGAGGGAGGTTCATGGCC
TACTCGCTGTCACCTTCTGCTCCTCACTCTCCTCACCTCCCCTCTCTCCG
CTCCGCATCCTCCGCTATCCTCGATCAAGAAAAATATCTCTCTGAGTTAC
TAGCTGAGCGTCATAAGCTTAATCCATTCCTGCCTGTATTACCGAATACT
TACCGGCTGTTGAACCAGGAAATTATGCGTGTAACCACACTGTTGGGGAA
TGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCTAGCCCTCTCACCT
CTGGAGGAATATTTTCAAATGGAGGAGCTGATGTGAATGGATTGGCATCA
CGGTTTCAATCAGAAATTTCTGGTTTAATGCAGTCATCATCAGCACAAAA
CTGGCTTAGCTCACAAGGTAGCTCATCGGGTCTTATTGTTAAGAGGACAA
TCAGAGTGGATATTCCAGTCGAAAAATATCCTAATTTCAACTTTGTCGGG
CGCCTCCTTGGTCCTCGAGGCAACTCGCTTAAGCGAGTCGAAGCTAGTAC
AGAATGCCGTGTTCTGATTAGGGGACGCGGCAGTATAAAGGATCCAGCAA
GGGAAGAAATGATGAGAGGAAAACCTGGGTATGAACATT
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