CX671794

Overview
NameCX671794
Unique NameCX671794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig317 contig Csv1_Contig317:41..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  120 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 207          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIA_XENLA (Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  120 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 207          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.352e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.641e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RGR S++D  +EE  RGKP +EHLNE LH+L+  E      + ++ +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  119 CKIMVRGRSSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAILNGTYRD 206          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.143e-14
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  654 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLRE 917
            C++++RG+GS++D  +E+  RGKP +EHL++ LH+L+  E        +L QA   ++ LL P  E  D  KK+QL ELA++NGT R+
Sbjct:  174 CKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261          
BLAST of CX671794 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.143e-14
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  642 CRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELALLNGTLREEGSP 917
            C++++RG+GS++D ++E   RGK  +EHL + LH+LV+ E     V  +L  A E ++ LL P  E  D  K++QL ELA++NGT R   SP
Sbjct:  242 CKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSP 333          
The following BLAST results are available for this feature:
BLAST of CX671794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
QKI_FELCA7.161e-1746.59Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CANFA7.161e-1746.59Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN7.161e-1746.59Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA7.161e-1746.59Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
QKIB_DANRE7.161e-1746.59Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
QKIA_XENLA7.161e-1746.59Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 ... [more]
QKI_CHICK9.352e-1746.59Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
QKIA_DANRE4.641e-1645.45Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]
HOW_DROME1.143e-1442.05Protein held out wings OS=Drosophila melanogaster ... [more]
GLD1_CAEEL1.143e-1442.39Female germline-specific tumor suppressor gld-1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B11-C21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671794 ID=CX671794; Name=CX671794; organism=Citrus sinensis; type=EST; length=920bp
TTTTTTTTAATGAAAAACAAAATATGTAGTATGAATTAAAGAAAACAAAT
AAATTTATCGTAGTCATAGACAGAATGGCAGAGATTGCCTTCTCAAAAAA
CCTAAATAACCATCTAAAACTAGTGCATAACCCTTCAACCAAAACCGCCG
TTGCCTCCACCAACCCACACTTCACATTTAAGTATAAAAACCATACCCTT
TACTCCCCCCATAAAAAACCCCGACACTGTATCAAAACTGTTATTACAAG
CTCATAATATATAGCCTAACAATACAAGAACGGCACTGGAGAGATAATGG
TCTGACCAATTGCCTTAAGCAACAAATAAAATGCAACCCCGAGGACTCAA
ACCAACCATTGCTTTACTACAAAATACCGTCATTAAACCTCCTCCAAGCA
GAGGGAAAACACACTTTCATATAGAAACAAGTTAGAACTAGCACACGCTA
TAGTGCCAGTGCCCCGATGGCAGTTGGAGGCATTTGTCCGACACAGCCAC
ACCTGTGGTATGAAAACTGCCGCTTACTAGCAGATGCTAACAAACAAGCT
CCAAAAGCCTAATATTTTGGGTCCATTACCCTCTAGTCTTAGCTCTCTTC
ATACCAAGGCTGTTATGGAAGGGGGACACTGAACCAGACATTGGAGAACC
CTCTTCACGAAGTGTACCATTGAGCAGTGCAAGCTCTCGCAGTTGTTGTT
TCTTGTAGAAATCATGGGATTCATCCACAGGCTTGAGCAAATCTTCAAGT
ATCTCACGTGCTTGCATTAGGCGAGCATCAACTATCTCAACTGGCAATTC
TGCCTCAACCAGGATATGGAGAGGCTCATTCAAATGTTCATACCCAGGTT
TTCCTCTCATCATTTCTTCCCTTGCTGGATCCTTTATACTGCCGCGTCCC
CTAATCAGAACACGGCATTC
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